Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   COG38_RS02235 Genome accession   NZ_CP024263
Coordinates   436789..437418 (+) Length   209 a.a.
NCBI ID   WP_001612760.1    Uniprot ID   A0A377CFT3
Organism   Escherichia coli O169:H41 strain F6326-C1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 431789..442418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COG38_RS02210 ycbZ 432177..433937 (-) 1761 WP_001612759.1 Lon protease family protein -
  COG38_RS02215 matP 434123..434575 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  COG38_RS02220 ompA 434652..435704 (-) 1053 WP_001307702.1 porin OmpA -
  COG38_RS02230 sulA 436061..436570 (-) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  COG38_RS02235 sxy/tfoX 436789..437418 (+) 630 WP_001612760.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  COG38_RS02240 yccS 437381..439543 (-) 2163 WP_000323868.1 YccS family putative transporter -
  COG38_RS02245 yccF 439553..439999 (-) 447 WP_001261235.1 YccF domain-containing protein -
  COG38_RS02250 helD 440122..442176 (+) 2055 WP_001612761.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24146.03 Da        Isoelectric Point: 9.4081

>NTDB_id=253206 COG38_RS02235 WP_001612760.1 436789..437418(+) (sxy/tfoX) [Escherichia coli O169:H41 strain F6326-C1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSNGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=253206 COG38_RS02235 WP_001612760.1 436789..437418(+) (sxy/tfoX) [Escherichia coli O169:H41 strain F6326-C1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTATTTGCGATGGTTTCTAATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A377CFT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment