Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   COG37_RS17290 Genome accession   NZ_CP024257
Coordinates   3297617..3298246 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O25:H16 strain F5505-C1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3292617..3303246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COG37_RS17275 helD 3292859..3294913 (-) 2055 WP_001735080.1 DNA helicase IV -
  COG37_RS17280 yccF 3295036..3295482 (+) 447 WP_001261235.1 YccF domain-containing protein -
  COG37_RS17285 yccS 3295492..3297654 (+) 2163 WP_000875061.1 YccS family putative transporter -
  COG37_RS17290 sxy/tfoX 3297617..3298246 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  COG37_RS17295 sulA 3298465..3298974 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  COG37_RS17305 ompA 3299331..3300371 (+) 1041 WP_000750416.1 porin OmpA -
  COG37_RS17310 matP 3300447..3300899 (-) 453 WP_004000276.1 macrodomain Ter protein MatP -
  COG37_RS17315 ycbZ 3301085..3302845 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=253180 COG37_RS17290 WP_000839153.1 3297617..3298246(-) (sxy/tfoX) [Escherichia coli O25:H16 strain F5505-C1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=253180 COG37_RS17290 WP_000839153.1 3297617..3298246(-) (sxy/tfoX) [Escherichia coli O25:H16 strain F5505-C1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment