Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   DF184_RS06425 Genome accession   NZ_CP029398
Coordinates   1279106..1281319 (-) Length   737 a.a.
NCBI ID   WP_109371569.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1274106..1286319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS06395 (DF184_06395) - 1274233..1275027 (-) 795 WP_109371565.1 Nif3-like dinuclear metal center hexameric protein -
  DF184_RS06400 (DF184_06400) - 1275017..1275700 (-) 684 WP_024411835.1 tRNA (adenine(22)-N(1))-methyltransferase TrmK -
  DF184_RS06405 (DF184_06405) - 1275702..1276376 (-) 675 WP_105119610.1 DnaD domain-containing protein -
  DF184_RS06410 (DF184_06410) metA 1276386..1277327 (-) 942 WP_014637718.1 homoserine O-succinyltransferase -
  DF184_RS06415 (DF184_06415) - 1277431..1277943 (-) 513 WP_002937136.1 adenine phosphoribosyltransferase -
  DF184_RS06420 (DF184_06420) - 1277958..1279127 (-) 1170 WP_109371567.1 DUF3114 domain-containing protein -
  DF184_RS06425 (DF184_06425) recJ 1279106..1281319 (-) 2214 WP_109371569.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  DF184_RS06430 (DF184_06430) cls 1281476..1283023 (-) 1548 WP_109371571.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 82626.28 Da        Isoelectric Point: 4.5071

>NTDB_id=253177 DF184_RS06425 WP_109371569.1 1279106..1281319(-) (recJ) [Streptococcus suis strain HN105]
MIKPNYDWQLLTGFSDEQFIKIAKKEGVDPVAAKLLYERGIHSAEELHTFLQPSLEDLHDPYLLHDMDKAVERIRRAIED
YEQILIYGDYDADGMTSASILKETLEEMGAEVQVYLPNRFTDGYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQ
EMGVDVVVTDHHSMQETLPNAYAIVHPEHPEGNYPFKHLAGCGVAFKLACALLETVHADLLDLVAIGTIADMVSLTDENR
VMVKYGLSLLKQTERAGLQELIKIAGIDIDSIDEETVGFQLAPRLNALGRLDDPNPAIELLTGFDDEEAHEIALMIDSKN
VERKDVVQAIYDEAKTMLRHDRPVQVLAKEGWNPGVLGIVAGRLLEELHQPVIVLSIEDGKAKGSARSVEAVDIFKALKD
HQDLFIAFGGHAGAAGMTLEVDKLEELALTLADYIIENKLDLSSKSSLVLDEELDLEELTLDTLKSFEKLAPYGMDNKKP
VFYIRDFQVESARTMGQNNAHLKLRITKGAAGFDVVAFGKGNLALEFSQAKGLELAVTLSVNQWNGNTSLQLMLVDARVN
GVQLYNIRGKQHPIPAGVPILDIENPVADNKAIVLANLPEDLSSLRSYFQEREFEAIYFKNEIAKPYYLDGYGSREQFAK
LYKTIYQFDEFDVRYKLKDLAGYLKIKDSLLVKMIQIFQELEFVTITDGVMRVNKEAQKREISESQIYQELKETVIQQEL
MALGTVQEIYEWLCGRV

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=253177 DF184_RS06425 WP_109371569.1 1279106..1281319(-) (recJ) [Streptococcus suis strain HN105]
GTGATAAAACCCAATTATGACTGGCAATTATTGACCGGTTTTTCTGATGAACAATTTATCAAAATTGCTAAAAAAGAAGG
AGTGGACCCGGTAGCGGCTAAGTTGCTGTATGAACGTGGCATCCATTCGGCGGAAGAATTGCATACTTTCTTACAACCAA
GCTTAGAAGACCTTCACGATCCCTATTTACTACATGATATGGACAAGGCGGTAGAGCGGATTCGCCGAGCAATCGAAGAT
TACGAACAAATTTTGATTTATGGAGATTATGATGCAGATGGCATGACCTCGGCATCTATTCTGAAAGAAACTCTGGAGGA
AATGGGGGCAGAAGTCCAAGTTTATCTTCCCAACCGTTTCACAGATGGCTATGGGCCAAATCAATCAGTTTACAAGTATT
TTATCGAGCAGCAGGGGATTTCTCTTATTGTGACGGTGGACAATGGCGTAGCGGGTCATGAAGCGATTGCCTATGCCCAG
GAAATGGGTGTCGATGTTGTCGTGACAGACCACCATTCCATGCAGGAAACCCTTCCCAATGCCTATGCGATTGTACATCC
AGAGCATCCAGAGGGAAATTATCCCTTCAAACATTTGGCAGGTTGCGGTGTGGCTTTCAAATTGGCCTGTGCTCTTCTTG
AAACGGTTCATGCAGACTTGCTGGATTTGGTCGCAATTGGCACTATCGCTGATATGGTCAGCTTGACCGATGAGAATCGT
GTCATGGTCAAATATGGTCTCTCGCTTCTCAAACAGACTGAGCGAGCAGGTTTGCAAGAGTTGATAAAGATAGCTGGTAT
TGACATAGACAGTATTGATGAAGAAACAGTTGGTTTCCAACTTGCTCCGAGGTTGAATGCCCTTGGGCGACTCGATGATC
CTAATCCAGCCATCGAATTACTGACTGGTTTTGATGACGAAGAGGCCCATGAGATTGCTCTCATGATTGACAGTAAGAAT
GTCGAGCGTAAGGATGTCGTCCAAGCAATTTACGATGAAGCAAAAACCATGCTCCGTCATGATAGACCTGTTCAAGTTCT
GGCTAAAGAAGGTTGGAACCCAGGTGTTTTAGGGATTGTAGCAGGACGCCTACTAGAAGAATTGCACCAGCCTGTTATTG
TCTTGTCTATTGAAGATGGTAAGGCAAAGGGTTCGGCTCGTTCTGTTGAAGCGGTTGACATTTTCAAGGCCCTTAAAGAT
CATCAGGACCTATTTATCGCCTTTGGTGGTCATGCTGGTGCAGCAGGTATGACCTTGGAAGTTGACAAACTTGAAGAGCT
TGCTCTAACCTTGGCAGACTACATTATCGAAAATAAATTGGATTTATCCAGCAAGTCTTCGCTGGTCTTAGATGAAGAAT
TGGATTTAGAGGAATTAACCCTAGATACTCTAAAATCTTTCGAGAAGCTTGCGCCTTACGGCATGGATAATAAAAAGCCT
GTATTCTACATCAGAGACTTTCAGGTAGAATCAGCAAGAACCATGGGGCAGAATAATGCTCATTTGAAACTACGCATTAC
TAAAGGTGCTGCTGGATTTGATGTGGTTGCTTTTGGTAAGGGTAATCTAGCCTTGGAATTTTCACAGGCCAAGGGCTTAG
AACTAGCTGTTACCTTGTCTGTCAATCAATGGAATGGCAATACCAGTCTTCAGCTCATGTTGGTTGATGCTCGGGTCAAT
GGTGTTCAACTTTATAATATTCGTGGAAAACAACATCCTATTCCTGCTGGAGTCCCAATTTTGGACATTGAAAATCCAGT
AGCAGATAACAAAGCAATTGTCTTAGCTAACTTGCCTGAGGACCTCAGTAGTCTGCGTAGCTATTTTCAGGAAAGAGAAT
TTGAAGCCATTTATTTTAAAAATGAAATTGCCAAACCGTACTATCTAGATGGTTATGGTAGCCGAGAACAATTCGCTAAA
TTGTACAAGACTATTTACCAATTTGATGAGTTTGATGTCCGCTACAAACTGAAAGATTTGGCTGGTTACTTAAAAATTAA
GGACAGTCTATTGGTCAAAATGATTCAGATTTTCCAAGAATTAGAATTCGTCACGATTACGGATGGGGTCATGCGGGTCA
ACAAAGAGGCGCAGAAGCGAGAGATTTCAGAAAGTCAGATTTATCAAGAATTGAAAGAAACAGTTATCCAACAAGAGTTG
ATGGCGCTTGGCACCGTTCAGGAAATTTATGAATGGCTATGTGGTCGCGTTTGA

Domains

Predicted by InterProScan.

RecJ OB domain (RecJ_OB)

(451-556)

DHHA1 domain (DHHA1)

(317-433)

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(588-733)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

72.962

99.864

0.729
  recJ Bacillus subtilis subsp. subtilis str. 168

38.235

100

0.388