Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   DF184_RS05850 Genome accession   NZ_CP029398
Coordinates   1149955..1153221 (-) Length   1088 a.a.
NCBI ID   WP_109371495.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1144955..1158221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS05845 (DF184_05845) rexA 1146305..1149955 (-) 3651 WP_044679992.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  DF184_RS05850 (DF184_05850) rexB 1149955..1153221 (-) 3267 WP_109371495.1 ATP-dependent nuclease subunit B Machinery gene

Sequence

Protein


Download         Length: 1088 a.a.        Molecular weight: 124459.64 Da        Isoelectric Point: 5.0582

>NTDB_id=253174 DF184_RS05850 WP_109371495.1 1149955..1153221(-) (rexB) [Streptococcus suis strain HN105]
MKLVYTDIRNPLTQYLTDTAAEFAKEAKRVFYIAPNSLSFEMERKVLEYLPEQATFDIIVTRFGQLARYLMIDRKEAGQP
LDDVGLAMIFFRVLSQFKDGDLKVYGRLQTDFGFINQLVALYKELQRANMSILDLEAMESPDKQADLVKIFLAVTDILSK
EGFEHQSQLAQLTSLVETGQLDEQLKNIVLVVDGFSRFSAEEEALVSALNERVSEILIGVYASKKAVQATYAEGNVYQAN
VDFLRQLSTQFQTKATYIGQEPVLDSIGKFSKNMEAYYDYSGTMIDLTPADQEKIQLWEVVNQKEEVEQVATAIRQHVHQ
GARYKDILLLLGDVDSYKLQIGKIFDKYDIPYYFGKAEEMSHHPLVHFVESLERLRRYRFRAEDLLNLLKSGLYASISQK
ELDLFESYILFADMKGQAAFSRAFSVNGRADYDVETVKEKRLVYDLTVLEPLRAKIMEPLNQLFKAGPQSGTALLEKFMA
FLEAIELPENMEKMSRNLSEVEQEKEEQVWKSFTHILENFYQIFGKEKLKIDDFLAILQAGMQASHYRTVPATVDVVNVK
SYDLIEPHTAKYVYAIGMGQSNFPKVAKNTSLLTEEEMEKVNLVSASSSRFDLVSRENIKKNHAAMMSLLNAATEQLVIS
TPQIYNEGEDSLSPYIKILQKMGLKSEERGRIKTLSPQDIGHYKSLLSRLIESERPSLDNEEWEGQRAFWTVLVRHLKKK
LESQGIEIPTITDDIASKQLSDETLAALYPEDKPLNLSASSLTNFYNNQYLYFVRNVLRLREQESIHPTAFQHGLFLHRI
FERVVMDQSELDFDQKVDKAILRTRDEAEFAMFYNQDAAARYTEEVLDKIARSSATILRDNDLVEIDGQEKSFRQDKALV
FDFQNGKSVHVNGTIDRLDTLQINQAVGVVDYKSSDQSFSVGDFYNGLKPQLVTYLAALQELDETKDKPVFGAMYLHLQD
PIIKLKDTKNLEQLEGAANTSLVYKGLFLKEESLGLNHFYQTRNQLYTGDEFAVLLNHNQELYKQAALDILAGRFAINPY
TKDGRSVAGEQLKAITGFEADRHMGMARRLVKEAKRQDWMERMKGGQD

Nucleotide


Download         Length: 3267 bp        

>NTDB_id=253174 DF184_RS05850 WP_109371495.1 1149955..1153221(-) (rexB) [Streptococcus suis strain HN105]
ATGAAATTAGTCTATACAGATATTCGCAATCCTCTGACGCAGTATTTAACGGATACCGCAGCAGAATTTGCTAAGGAAGC
TAAGCGAGTTTTTTACATTGCTCCAAACTCTCTATCCTTTGAGATGGAGCGCAAGGTCTTGGAATATTTGCCTGAACAGG
CAACTTTTGATATTATCGTGACCCGTTTTGGGCAATTGGCCCGCTATTTGATGATTGATAGGAAAGAAGCAGGTCAACCG
CTGGATGATGTTGGTCTGGCCATGATTTTCTTTCGTGTGCTATCGCAATTTAAAGACGGCGACTTGAAAGTCTATGGTCG
TTTACAGACAGATTTTGGGTTTATTAACCAGCTAGTTGCTTTATACAAAGAATTGCAACGGGCAAATATGTCTATTTTGG
ACTTGGAAGCCATGGAGTCACCAGATAAGCAGGCTGATTTGGTAAAGATTTTTCTGGCTGTAACAGACATTTTGTCCAAA
GAAGGCTTTGAGCATCAGTCTCAGTTAGCACAGCTGACTAGCTTGGTGGAAACTGGTCAGTTGGATGAGCAGTTGAAGAA
CATTGTGCTGGTGGTAGACGGATTTTCTCGTTTTTCGGCAGAAGAAGAAGCTTTAGTAAGTGCTTTAAATGAACGGGTGT
CGGAAATCCTGATTGGTGTATATGCCAGCAAGAAAGCTGTGCAAGCGACCTATGCGGAAGGGAACGTTTATCAAGCCAAC
GTTGACTTTTTACGTCAGTTATCAACGCAGTTCCAGACTAAGGCTACTTATATTGGTCAAGAGCCAGTCTTGGACAGTAT
TGGTAAATTTTCAAAGAATATGGAAGCCTATTATGACTACAGCGGGACCATGATAGACTTGACTCCAGCAGACCAAGAAA
AAATCCAACTATGGGAAGTCGTTAACCAAAAAGAAGAAGTTGAGCAGGTTGCGACTGCAATTCGTCAGCATGTGCATCAA
GGTGCTCGCTATAAAGACATCTTGTTGCTCTTGGGTGATGTGGATAGCTACAAGTTGCAGATTGGTAAGATTTTTGACAA
GTATGATATTCCTTACTATTTCGGCAAGGCAGAGGAGATGAGTCATCATCCCCTGGTCCATTTTGTGGAGTCCTTGGAGC
GCTTGCGCCGCTATCGTTTCCGAGCGGAAGACTTGCTCAATCTCCTCAAATCTGGTTTGTACGCCAGCATTTCCCAAAAG
GAGCTGGACCTATTTGAGTCTTACATCCTTTTTGCGGATATGAAGGGGCAGGCTGCTTTTTCGCGGGCTTTTTCGGTCAA
TGGCAGAGCGGACTACGATGTTGAGACTGTCAAGGAGAAGCGACTTGTCTATGATTTGACTGTCTTGGAACCCCTACGTG
CTAAGATTATGGAGCCTTTGAACCAGCTGTTTAAGGCTGGACCACAATCTGGAACTGCCTTGCTTGAGAAATTTATGGCA
TTTTTGGAGGCAATTGAGCTTCCTGAAAATATGGAAAAAATGTCTCGAAATTTGAGCGAAGTAGAGCAAGAAAAAGAAGA
GCAGGTCTGGAAAAGTTTTACCCATATTCTAGAGAATTTTTATCAGATTTTTGGCAAGGAGAAGTTGAAAATAGATGATT
TTCTGGCTATTTTACAGGCTGGAATGCAGGCCAGCCACTATCGTACCGTTCCTGCAACGGTTGATGTGGTCAATGTCAAA
TCTTATGATTTGATCGAGCCACACACTGCAAAGTATGTTTATGCTATCGGAATGGGCCAGTCCAATTTTCCAAAAGTTGC
CAAGAATACCAGTCTATTGACAGAAGAAGAGATGGAAAAAGTCAATCTTGTCTCGGCTAGTTCCTCGCGTTTCGATTTGG
TCAGCCGAGAGAATATTAAGAAGAACCATGCTGCCATGATGTCTCTGCTTAATGCTGCGACGGAACAGTTAGTCATTTCA
ACTCCTCAGATTTATAACGAAGGTGAAGATAGTCTCTCCCCTTATATCAAGATTCTCCAAAAAATGGGGTTGAAATCCGA
AGAACGTGGTCGGATTAAAACACTTAGTCCGCAAGACATCGGTCACTACAAGAGTCTCTTATCCCGTTTGATTGAGTCAG
AAAGACCATCTCTTGATAATGAAGAATGGGAAGGGCAGAGGGCCTTCTGGACAGTCTTGGTTCGCCATTTGAAGAAGAAA
TTGGAGTCGCAAGGCATTGAAATTCCGACCATTACTGATGATATTGCTTCTAAACAACTTTCAGACGAAACCTTGGCTGC
TTTATATCCAGAGGATAAGCCGCTCAATCTTTCTGCATCCAGCTTGACCAATTTCTACAATAACCAATATCTTTACTTTG
TCCGTAATGTTCTTCGCTTGCGGGAACAGGAATCCATCCATCCGACTGCCTTTCAGCATGGTTTGTTCTTGCATCGGATT
TTTGAAAGAGTGGTCATGGACCAATCTGAGCTAGATTTTGATCAAAAAGTGGACAAGGCCATCCTGCGTACACGTGACGA
GGCAGAATTTGCTATGTTTTATAACCAGGATGCGGCTGCTCGTTATACGGAGGAAGTGCTGGATAAGATTGCTCGCTCCA
GTGCGACCATTTTGCGGGATAATGATTTGGTTGAAATTGATGGCCAGGAAAAGAGTTTCCGTCAGGATAAGGCGCTAGTT
TTTGACTTTCAAAATGGCAAGAGTGTGCATGTAAATGGTACTATTGACCGCTTGGATACCTTACAAATCAATCAGGCTGT
CGGTGTTGTGGATTACAAGTCCAGTGACCAATCTTTTTCAGTTGGGGATTTTTACAATGGTCTAAAACCTCAGTTGGTGA
CCTACTTGGCAGCCTTACAAGAGCTGGATGAAACCAAGGATAAACCTGTTTTTGGAGCTATGTATTTGCATTTGCAGGAT
CCGATTATCAAATTAAAAGACACGAAGAATTTAGAACAGCTAGAAGGAGCTGCCAATACTAGCTTGGTTTACAAGGGGCT
TTTCTTGAAGGAGGAAAGTCTGGGGCTCAATCATTTTTATCAGACTCGTAACCAACTCTATACGGGAGATGAGTTTGCGG
TGTTATTGAACCACAACCAAGAACTCTACAAACAAGCTGCTTTGGACATTCTGGCTGGTCGCTTTGCTATTAACCCTTAT
ACAAAAGATGGGCGTTCGGTGGCAGGTGAGCAGCTGAAGGCAATCACTGGTTTTGAGGCGGATCGGCACATGGGCATGGC
ACGGCGGTTGGTCAAAGAGGCCAAGCGTCAAGATTGGATGGAACGAATGAAAGGAGGTCAGGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(757-1041)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.787

100

0.454