Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DF184_RS05640 Genome accession   NZ_CP029398
Coordinates   1109182..1110918 (-) Length   578 a.a.
NCBI ID   WP_109371466.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1104182..1115918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS05625 (DF184_05625) - 1105033..1106319 (-) 1287 WP_002940676.1 homoserine dehydrogenase -
  DF184_RS05630 (DF184_05630) - 1106424..1107347 (+) 924 WP_044679604.1 polysaccharide deacetylase family protein -
  DF184_RS05635 (DF184_05635) rcrQ 1107404..1109173 (-) 1770 WP_109371464.1 ABC transporter ATP-binding protein Regulator
  DF184_RS05640 (DF184_05640) rcrP 1109182..1110918 (-) 1737 WP_109371466.1 ABC transporter ATP-binding protein Regulator
  DF184_RS05645 (DF184_05645) - 1110994..1111236 (-) 243 WP_012028079.1 KH domain-containing protein -
  DF184_RS05650 (DF184_05650) rpsP 1111258..1111530 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  DF184_RS05655 (DF184_05655) - 1111655..1111963 (-) 309 WP_029171816.1 DUF4298 domain-containing protein -
  DF184_RS05660 (DF184_05660) pcp 1111963..1112610 (-) 648 WP_024411282.1 pyroglutamyl-peptidase I -
  DF184_RS05665 (DF184_05665) - 1112607..1113368 (-) 762 WP_024384449.1 class I SAM-dependent methyltransferase -
  DF184_RS05670 (DF184_05670) - 1113439..1113753 (-) 315 WP_024384448.1 hypothetical protein -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65048.36 Da        Isoelectric Point: 5.1916

>NTDB_id=253172 DF184_RS05640 WP_109371466.1 1109182..1110918(-) (rcrP) [Streptococcus suis strain HN105]
MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFAEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVIVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERFESVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALAPLQTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=253172 DF184_RS05640 WP_109371466.1 1109182..1110918(-) (rcrP) [Streptococcus suis strain HN105]
ATGAATCTGATTTGGACCTACTTAAAAAAATATCCTAAGTGGATTGCCTTGGACTTGTTGGGGGCCTTCTTGTTTGTAGT
GGTAAACTTGGGCTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGACTGATTGTCCTGCTCGGTATTGTTGGCCGAGTGACACTTGCCTATGCAGCTGGAAAGTTG
ACGACCAATATCGTCAAAGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTACTCTCATCACGAGTATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTCTTGATGCAGTTTGCGGAGATGGTATTGAAGCTGG
GAATTATCACTCCCTTGATGATGATTGCTTCTGTTATCATGACCTTGGTAACCAGTCCAAGTCTGGCTTGGACAGTCGCA
GTAGCCATGCCGTTTCTTGTTATCGTTATTTTCTATGTGGCAACCAAAACTCGTCCTCTTTCTGAAAAGCAACAAAAACG
TTTGGACACGATCAACCAATATGTTCGTGAAAATCTCATGGGCTTACGTGTCATTCGTGCCTTTACTCGTGAGGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAAGAATATACCGATATTTCCAAAAAACTCTTTAATCTGACTGGATTGACAGAG
CCGCTCTTTGTCCAGATTATCATTGCTATGATTGTGGCCATTGTCTGGTTCGCATTGGCTCCTTTGCAAACAGGCAGTCT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCATTCTTACTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCCGTATCGAGCCAACGGATTCAGGAAGTCTTGGACATGCCCATTTCCATTTCTAAGAATGAA
GATGGGATTACTGAAACAGACACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACTGAATC
GCCTGTTCTCCACAATATTTCATTTAAGGCTAAGCCTGGAGAAACCATTGCCTTTATTGGTTCAACTGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAGCAAGATTGGTTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCTGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCATCTAGCAGAAGGCGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCGCGTGCCATTGTCAAACAGCCCGATATTTATATCTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
GATTTTGAGGAGTCGTTTGAAGGAAGTGACAGAAAATGCGACGGTGCTGATTGTTGCCCAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTAAACGAAGGTGAGATCGTTGGTCGTGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTACCGAGAAATTGCCAACTCTCAACTTAATCGTCAATCGCTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.333

100

0.398