Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DF184_RS05635 Genome accession   NZ_CP029398
Coordinates   1107404..1109173 (-) Length   589 a.a.
NCBI ID   WP_109371464.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1102404..1114173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS05615 (DF184_05615) murB 1103025..1103933 (-) 909 WP_024402209.1 UDP-N-acetylmuramate dehydrogenase -
  DF184_RS05620 (DF184_05620) thrB 1104169..1105029 (-) 861 WP_044679603.1 homoserine kinase -
  DF184_RS05625 (DF184_05625) - 1105033..1106319 (-) 1287 WP_002940676.1 homoserine dehydrogenase -
  DF184_RS05630 (DF184_05630) - 1106424..1107347 (+) 924 WP_044679604.1 polysaccharide deacetylase family protein -
  DF184_RS05635 (DF184_05635) rcrQ 1107404..1109173 (-) 1770 WP_109371464.1 ABC transporter ATP-binding protein Regulator
  DF184_RS05640 (DF184_05640) rcrP 1109182..1110918 (-) 1737 WP_109371466.1 ABC transporter ATP-binding protein Regulator
  DF184_RS05645 (DF184_05645) - 1110994..1111236 (-) 243 WP_012028079.1 KH domain-containing protein -
  DF184_RS05650 (DF184_05650) rpsP 1111258..1111530 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  DF184_RS05655 (DF184_05655) - 1111655..1111963 (-) 309 WP_029171816.1 DUF4298 domain-containing protein -
  DF184_RS05660 (DF184_05660) pcp 1111963..1112610 (-) 648 WP_024411282.1 pyroglutamyl-peptidase I -
  DF184_RS05665 (DF184_05665) - 1112607..1113368 (-) 762 WP_024384449.1 class I SAM-dependent methyltransferase -
  DF184_RS05670 (DF184_05670) - 1113439..1113753 (-) 315 WP_024384448.1 hypothetical protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65880.89 Da        Isoelectric Point: 5.5812

>NTDB_id=253171 DF184_RS05635 WP_109371464.1 1107404..1109173(-) (rcrQ) [Streptococcus suis strain HN105]
MKNRSVFTRVWDYLRRYKSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDMANGVEGAQINYSYIAIMLAIYALR
ALMYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKKQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
SDLQEVGFKASFMSGLLMPLVHGLSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTESLTGQVSFEQVEFGYSENKPLIRNFNLDVQPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGSIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=253171 DF184_RS05635 WP_109371464.1 1107404..1109173(-) (rcrQ) [Streptococcus suis strain HN105]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACAAATCTTCTGTATTTTTAGCTGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTGGAACCCTTTGTTCTGGGGCTTATCATCACAGAATTGACTAAGAATTTAT
TGGACATGGCAAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCTATCTATGCCCTGCGC
GCTCTGATGTATGAAATCGGTGCCTATGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACCAAGGAACTACG
TCAGGACTTGAGCCACAAAATTAACAAGATTCCTGTTTCTTATTTTGACAAGCATCAATATGGTGACTTGCTGGGTCGTT
TTACAAGCGATGTGGAAACTGTTTCAAACGCCCTGCAACAAAGTTTCCTCCAGTTAGTCAATGCTGTTCTGACTCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTGGCTCTTGTGGTCGTGACCTTGGTTCCTGTGACCTATTTTGG
TTCCAAGTTTGTCATGGGCAAATCCCAACCTTATTTTAAAAAGCAGGCTGATGCGCTTGGTCGTTTGAACGGTTTTGTCC
AAGAAAATCTGACAGGTTTTAATGTCCTCAAACTCTACGGACGTGAAGAAATTTCTACAGAAGAATTTCGCCAGATTACC
TCAGATTTGCAGGAAGTTGGATTCAAGGCTAGTTTCATGTCAGGATTGCTCATGCCCCTGGTACACGGCTTGTCAAACAT
TGCCTATGTCGTCGTGGCTCTGCTATCTGGTCTGAAAGTCCTTGCGGGTACATTGACAGTTGGTAATATGCAGGCCTTCG
TCCAATACGTATGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAGTTGGCACCCCAGTTGCAGTCTGCTAAATCTTCC
CTTGAACGCATCTTTTCAGTCCTAGATGAGCTTGACGAAGAAGACGCCAATGCGCTAGAGTTGACAGAAAGTCTGACCGG
ACAAGTCAGCTTTGAGCAGGTCGAATTTGGCTATTCAGAAAACAAGCCGCTCATCCGTAACTTTAATCTGGATGTTCAAC
CCGGTGAGATGGTGGCCATCGTTGGTCCAACAGGGGCAGGTAAGACTACTCTTATCAACTTGCTCATGCGTTTCTACGAT
GTGACATCAGGTTCTATCAAAGTGGATGGTCAGGACATTCGAAATCTTTCACGTCAATCCTACCGTAGTCAATTTGGCAT
GGTATTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAATCTGCGTTTTGGACGCCTGGATGCGACGGATGAGG
AAATTGTGGAGGCTGCTAAAGCTGCCAACGTTGACCACTTTATCCGTACCCTGCCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCGCGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAGGCCATGAAACGGTTGATGAAAG
GGCGAACAAGTTTCGTCATCGCTCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTCTATTATAATCTTTATCAAAGTCAGTTTAGTGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.39

100

0.435