Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   DF184_RS05300 Genome accession   NZ_CP029398
Coordinates   1041915..1042583 (+) Length   222 a.a.
NCBI ID   WP_161949707.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1036915..1047583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS11015 (DF184_05270) - 1038010..1038150 (+) 141 WP_032532220.1 hypothetical protein -
  DF184_RS05275 (DF184_05275) - 1038163..1038552 (+) 390 WP_024401225.1 NisI/SpaI family lantibiotic immunity lipoprotein -
  DF184_RS05280 (DF184_05280) - 1038561..1039313 (+) 753 WP_024401226.1 ABC transporter ATP-binding protein -
  DF184_RS05285 (DF184_05285) - 1039314..1041284 (+) 1971 WP_109371425.1 FtsX-like permease family protein -
  DF184_RS05290 (DF184_05290) - 1041375..1041626 (+) 252 WP_029173101.1 DUF6290 family protein -
  DF184_RS05295 (DF184_05295) - 1041610..1041876 (+) 267 WP_109371427.1 type II toxin-antitoxin system RelE/ParE family toxin -
  DF184_RS05300 (DF184_05300) braR 1041915..1042583 (+) 669 WP_161949707.1 response regulator transcription factor Regulator
  DF184_RS05305 (DF184_05305) - 1042580..1043521 (+) 942 WP_109371428.1 sensor histidine kinase -
  DF184_RS05310 (DF184_05310) - 1043598..1045106 (+) 1509 WP_024401231.1 phosphoglucomutase -
  DF184_RS05315 (DF184_05315) xerS 1045169..1046239 (-) 1071 WP_105120535.1 tyrosine recombinase XerS Machinery gene
  DF184_RS05320 (DF184_05320) - 1046403..1046909 (-) 507 WP_044681638.1 AAA family ATPase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25523.33 Da        Isoelectric Point: 4.7736

>NTDB_id=253168 DF184_RS05300 WP_161949707.1 1041915..1042583(+) (braR) [Streptococcus suis strain HN105]
MMKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDISLPYYNGFYWTTEIRKTMTMPIIFI
SSSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSTDLSIDQFQLSLDGRFSSESEQVQLSPTETKIL
SALLERQGQIVSKEELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFDRIHTVRGVGYLVK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=253168 DF184_RS05300 WP_161949707.1 1041915..1042583(+) (braR) [Streptococcus suis strain HN105]
ATGATGAAAAAAGAGAAGATTTATATTGTTGAAGATGATGAGATGATTGTCCAACTCTTGAAGCAGCATTTGGGCAAATC
TTATCAGGTAGAAAGTGTGCAGAATTTCCGAGCTGTCAGTCAGGAAGTGGCGGAAATCAAACCAGACTTGGTTCTGATGG
ACATTAGCCTGCCCTATTACAACGGTTTTTATTGGACAACGGAAATCCGTAAAACCATGACCATGCCCATTATCTTTATC
TCTTCTAGCGATGATGAGATGAATGCGGTCATGGCTATGAACATGGGTGGCGATGATTTTGTGTCCAAGCCTTTTTCACT
GGGGATTTTGGATGCCAAAATCGGTGCCTTCCTGCGTCGAGTCAATCAATTCAGCAAATCAACTGACTTGTCTATCGACC
AGTTCCAGCTTAGTTTGGATGGGCGTTTTTCAAGCGAATCGGAACAGGTTCAGCTTTCACCTACTGAAACCAAAATTTTG
TCCGCCTTACTAGAACGACAAGGGCAGATTGTCAGTAAGGAAGAACTCTTGGAAAAACTCTGGGAAAATGAAGAATTTAT
CGATCAGAATACCCTCAATGTCAACATGACTCGTCTGCGTAAGAAGGTGAGTGAGGTGGGATTTGACCGTATTCATACTG
TGCGTGGCGTGGGGTACCTGGTCAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-220)

Response regulator receiver domain (Response_reg)

(7-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.727

99.099

0.473