Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DF184_RS02700 Genome accession   NZ_CP029398
Coordinates   534429..536090 (+) Length   553 a.a.
NCBI ID   WP_044679751.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 529429..541090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS02670 (DF184_02670) - 529717..530625 (-) 909 WP_024413789.1 neutral zinc metallopeptidase -
  DF184_RS02675 (DF184_02675) xseA 530792..532135 (+) 1344 WP_044674153.1 exodeoxyribonuclease VII large subunit -
  DF184_RS02680 (DF184_02680) - 532110..532325 (+) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  DF184_RS02685 (DF184_02685) - 532325..533194 (+) 870 WP_044674156.1 polyprenyl synthetase family protein -
  DF184_RS02690 (DF184_02690) - 533187..534008 (+) 822 WP_014638452.1 TlyA family RNA methyltransferase -
  DF184_RS02695 (DF184_02695) - 534001..534426 (+) 426 WP_002936261.1 arginine repressor -
  DF184_RS02700 (DF184_02700) recN 534429..536090 (+) 1662 WP_044679751.1 DNA repair protein RecN Machinery gene
  DF184_RS02705 (DF184_02705) - 536184..537017 (+) 834 WP_044674161.1 DegV family protein -
  DF184_RS02710 (DF184_02710) - 537010..537843 (+) 834 WP_002936251.1 SGNH/GDSL hydrolase family protein -
  DF184_RS02715 (DF184_02715) - 537815..538411 (+) 597 WP_044674164.1 YpmS family protein -
  DF184_RS02720 (DF184_02720) - 538501..538776 (+) 276 WP_002936247.1 HU family DNA-binding protein -
  DF184_RS02730 (DF184_02730) - 539348..539815 (+) 468 WP_109371217.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62749.89 Da        Isoelectric Point: 4.6542

>NTDB_id=253154 DF184_RS02700 WP_044679751.1 534429..536090(+) (recN) [Streptococcus suis strain HN105]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRTLEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDSDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLLQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=253154 DF184_RS02700 WP_044679751.1 534429..536090(+) (recN) [Streptococcus suis strain HN105]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAATGGGATGACCATTCT
ATCTGGTGAAACAGGTGCAGGTAAATCCATTATCATTGATGCCATGAACCTGATGCTAGGGGCACGTGCGACGACAGATG
TTATCAGACATGGGGCCGCCAAGGCTGAGATTGAAGGGCTCTTTTCCTTTGAAAATAGCAGAACTCTCGAGCAGATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAACTCATTATCCGTCGGGAAATCCTGCAAAATGGCCGTTCGGTCAGCCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAATCCCAGCACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGAATTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGTTGGAATACCAAATTGCTGAAATCGAAGCAGCTGATTTGAAGTCTGGTGAAGATATTCAACTCAATC
AGGAACGCGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATTCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTCGTTGAAGATGTGACTAAGCGTCTCAGCGATGTGGTGGACAATCTAGACT
TTGACGGCAATCGTCTCTTGCAATTGGAAAGTCGTCTGGATTTGCTCAATACCATTACGAAGAAATATGGCGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGCGAAGAATACAATCTATTGACAGGCAATGATTTATCTGGTGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGTCAATCACGCCATGAATTGGCTG
TTGTTTTAGAAGATATTATTCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTCGAATTTTACATCTCCACCAACCCAGGTGAAGACTTCAAGCCTCTGGT
TAAGGTGGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAGGAAGGCAAGACTT
CTATTGTCTTTGATGAGGTGGATACAGGGGTGTCTGGACGTGTGGCCCAGGCAATTGCTCAGAAAATTTATAAAATCGGA
CAATATGGTCAGGTTTTGGCAATCTCTCATTTACCGCAAGTCATTGCCATCGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACCGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.684

100

0.45