Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CS032_RS15440 Genome accession   NZ_CP024256
Coordinates   2703866..2704495 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ATCC 43886     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2698866..2709495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS032_RS15415 ycbZ 2699267..2701027 (-) 1761 WP_000156518.1 Lon protease family protein -
  CS032_RS15420 matP 2701213..2701665 (+) 453 WP_004000276.1 macrodomain Ter protein MatP -
  CS032_RS15425 ompA 2701741..2702781 (-) 1041 WP_000750416.1 porin OmpA -
  CS032_RS15435 sulA 2703138..2703647 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CS032_RS15440 sxy/tfoX 2703866..2704495 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CS032_RS15445 yccS 2704458..2706620 (-) 2163 WP_000875061.1 YccS family putative transporter -
  CS032_RS15450 yccF 2706630..2707076 (-) 447 WP_001261235.1 YccF domain-containing protein -
  CS032_RS15455 helD 2707199..2709253 (+) 2055 WP_001735080.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=253150 CS032_RS15440 WP_000839153.1 2703866..2704495(+) (sxy/tfoX) [Escherichia coli strain ATCC 43886]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=253150 CS032_RS15440 WP_000839153.1 2703866..2704495(+) (sxy/tfoX) [Escherichia coli strain ATCC 43886]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment