Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CQS47_RS19435 Genome accession   NZ_CP024245
Coordinates   3739677..3740306 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O27:H7 strain B4103-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3734677..3745306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQS47_RS19420 helD 3734919..3736973 (-) 2055 WP_000420533.1 DNA helicase IV -
  CQS47_RS19425 yccF 3737096..3737542 (+) 447 WP_001261231.1 YccF domain-containing protein -
  CQS47_RS19430 yccS 3737552..3739714 (+) 2163 WP_000875044.1 YccS family putative transporter -
  CQS47_RS19435 sxy/tfoX 3739677..3740306 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CQS47_RS19440 sulA 3740525..3741034 (+) 510 WP_001594941.1 SOS-induced cell division inhibitor SulA -
  CQS47_RS19450 ompA 3741391..3742431 (+) 1041 WP_000750416.1 porin OmpA -
  CQS47_RS19455 matP 3742507..3742959 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CQS47_RS19460 ycbZ 3743145..3744905 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=253137 CQS47_RS19435 WP_000839153.1 3739677..3740306(-) (sxy/tfoX) [Escherichia coli O27:H7 strain B4103-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=253137 CQS47_RS19435 WP_000839153.1 3739677..3740306(-) (sxy/tfoX) [Escherichia coli O27:H7 strain B4103-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment