Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DIZ83_RS20670 Genome accession   NZ_CP029371
Coordinates   3997200..3997715 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain C     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3992200..4002715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIZ83_RS20625 (DIZ83_20620) csrA 3992789..3992974 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  DIZ83_RS20655 (DIZ83_20650) yqaB 3994430..3994996 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  DIZ83_RS20660 (DIZ83_20655) yqaA 3994993..3995421 (+) 429 WP_001287454.1 YqaA family protein -
  DIZ83_RS20665 (DIZ83_20660) gshA 3995494..3997050 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  DIZ83_RS20670 (DIZ83_20665) luxS 3997200..3997715 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  DIZ83_RS20675 (DIZ83_20670) emrB 3997779..3999317 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  DIZ83_RS20680 (DIZ83_20675) emrA 3999334..4000506 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  DIZ83_RS20685 (DIZ83_20680) emrR 4000633..4001163 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  DIZ83_RS20690 (DIZ83_20685) ygaH 4001254..4001589 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  DIZ83_RS20695 (DIZ83_20690) ygaZ 4001579..4002316 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=253109 DIZ83_RS20670 WP_001130211.1 3997200..3997715(+) (luxS) [Escherichia coli strain C]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=253109 DIZ83_RS20670 WP_001130211.1 3997200..3997715(+) (luxS) [Escherichia coli strain C]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731