Detailed information NTG0253106

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DIZ83_RS20400
• Genome accession: NZ_CP029371
• Coordinates: 3944382..3945374 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain C
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3939382..3950374

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DIZ83_RS20370 (DIZ83_20365)	ispD	3939443..3940153 (+)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
DIZ83_RS20375 (DIZ83_20370)	ispF	3940153..3940632 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
DIZ83_RS20380 (DIZ83_20375)	truD	3940629..3941678 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
DIZ83_RS20385 (DIZ83_20380)	surE	3941659..3942420 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
DIZ83_RS20390 (DIZ83_20385)	pcm	3942414..3943040 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
DIZ83_RS20395 (DIZ83_20390)	nlpD	3943225..3944319 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
DIZ83_RS20400 (DIZ83_20395)	rpoS	3944382..3945374 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
DIZ83_RS20405 (DIZ83_20400)	ygbN	3945468..3946832 (-)	1365	WP_000104459.1	GntP family transporter	-
DIZ83_RS20410 (DIZ83_20405)	ygbM	3946921..3947697 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
DIZ83_RS20415 (DIZ83_20410)	ygbL	3947702..3948340 (-)	639	WP_001278994.1	aldolase	-
DIZ83_RS20420 (DIZ83_20415)	otnK	3948337..3949599 (-)	1263	WP_000590371.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=253106 DIZ83_RS20400 WP_000081550.1 3944382..3945374(+) (rpoS) [Escherichia coli strain C]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=253106 DIZ83_RS20400 WP_000081550.1 3944382..3945374(+) (rpoS) [Escherichia coli strain C]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715