Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   COG34_RS01275 Genome accession   NZ_CP024243
Coordinates   227592..228221 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O128:H27 strain 90-9281     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 222592..233221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COG34_RS01260 helD 222834..224888 (-) 2055 WP_001315388.1 DNA helicase IV -
  COG34_RS01265 yccF 225011..225457 (+) 447 WP_001261235.1 YccF domain-containing protein -
  COG34_RS01270 yccS 225467..227629 (+) 2163 WP_000875044.1 YccS family putative transporter -
  COG34_RS01275 sxy/tfoX 227592..228221 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  COG34_RS01280 sulA 228440..228949 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  COG34_RS01290 ompA 229306..230358 (+) 1053 WP_000750419.1 porin OmpA -
  COG34_RS01295 matP 230433..230885 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  COG34_RS01300 ycbZ 231071..232831 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=253096 COG34_RS01275 WP_000839153.1 227592..228221(-) (sxy/tfoX) [Escherichia coli O128:H27 strain 90-9281]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=253096 COG34_RS01275 WP_000839153.1 227592..228221(-) (sxy/tfoX) [Escherichia coli O128:H27 strain 90-9281]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment