Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   COG33_RS25735 Genome accession   NZ_CP024240
Coordinates   4951312..4951941 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O114:H49 strain 90-9280     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4946312..4956941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COG33_RS25710 ycbZ 4946702..4948462 (-) 1761 WP_000156526.1 Lon protease family protein -
  COG33_RS25715 matP 4948648..4949100 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  COG33_RS25720 ompA 4949175..4950227 (-) 1053 WP_000750419.1 porin OmpA -
  COG33_RS25730 sulA 4950584..4951093 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  COG33_RS25735 sxy/tfoX 4951312..4951941 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  COG33_RS25740 yccS 4951904..4954066 (-) 2163 WP_134688296.1 YccS family putative transporter -
  COG33_RS25745 yccF 4954076..4954522 (-) 447 WP_001261231.1 YccF domain-containing protein -
  COG33_RS25750 helD 4954645..4956699 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=253095 COG33_RS25735 WP_000839153.1 4951312..4951941(+) (sxy/tfoX) [Escherichia coli O114:H49 strain 90-9280]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=253095 COG33_RS25735 WP_000839153.1 4951312..4951941(+) (sxy/tfoX) [Escherichia coli O114:H49 strain 90-9280]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment