Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DIZ83_RS08740 Genome accession   NZ_CP029371
Coordinates   1643046..1643651 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain C     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1638046..1648651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIZ83_RS08715 (DIZ83_08715) aes 1638083..1639042 (+) 960 WP_000801849.1 acetyl esterase -
  DIZ83_RS08720 (DIZ83_08720) hemH 1639039..1640001 (-) 963 WP_001250117.1 ferrochelatase -
  DIZ83_RS08725 (DIZ83_08725) adk 1640237..1640881 (-) 645 WP_001220233.1 adenylate kinase -
  DIZ83_RS08735 (DIZ83_08735) htpG 1641062..1642936 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  DIZ83_RS08740 (DIZ83_08740) recR 1643046..1643651 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  DIZ83_RS08745 (DIZ83_08745) ybaB 1643651..1643980 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  DIZ83_RS08750 (DIZ83_08750) dnaX 1644033..1645964 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  DIZ83_RS08755 (DIZ83_08755) apt 1646093..1646644 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  DIZ83_RS08765 (DIZ83_08765) ybaN 1646797..1647174 (-) 378 WP_001188905.1 DUF454 family protein -
  DIZ83_RS08770 (DIZ83_08770) priC 1647244..1647771 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  DIZ83_RS08775 (DIZ83_08775) rsmS 1647785..1647946 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=253055 DIZ83_RS08740 WP_001195025.1 1643046..1643651(-) (recR) [Escherichia coli strain C]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=253055 DIZ83_RS08740 WP_001195025.1 1643046..1643651(-) (recR) [Escherichia coli strain C]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443