Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CNZ63_RS01235 Genome accession   NZ_CP024232
Coordinates   221717..222346 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O6:H16 strain 2014EL-1346-6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 216717..227346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNZ63_RS01220 helD 216959..219013 (-) 2055 WP_001295354.1 DNA helicase IV -
  CNZ63_RS01225 yccF 219136..219582 (+) 447 WP_001261235.1 YccF domain-containing protein -
  CNZ63_RS01230 yccS 219592..221754 (+) 2163 WP_000875061.1 YccS family putative transporter -
  CNZ63_RS01235 sxy/tfoX 221717..222346 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CNZ63_RS01240 sulA 222565..223074 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CNZ63_RS01250 ompA 223431..224471 (+) 1041 WP_000750416.1 porin OmpA -
  CNZ63_RS01255 matP 224547..224999 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CNZ63_RS01260 ycbZ 225185..226945 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=253051 CNZ63_RS01235 WP_000839153.1 221717..222346(-) (sxy/tfoX) [Escherichia coli O6:H16 strain 2014EL-1346-6]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=253051 CNZ63_RS01235 WP_000839153.1 221717..222346(-) (sxy/tfoX) [Escherichia coli O6:H16 strain 2014EL-1346-6]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment