Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CJV63_RS20820 Genome accession   NZ_CP024223
Coordinates   4161593..4162222 (+) Length   209 a.a.
NCBI ID   WP_001612760.1    Uniprot ID   A0A377CFT3
Organism   Escherichia coli O169:H41 strain 2014EL-1345-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4156593..4167222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJV63_RS20795 ycbZ 4156981..4158741 (-) 1761 WP_001612759.1 Lon protease family protein -
  CJV63_RS20800 matP 4158927..4159379 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CJV63_RS20805 ompA 4159456..4160508 (-) 1053 WP_001307702.1 porin OmpA -
  CJV63_RS20815 sulA 4160865..4161374 (-) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  CJV63_RS20820 sxy/tfoX 4161593..4162222 (+) 630 WP_001612760.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CJV63_RS20825 yccS 4162185..4164347 (-) 2163 WP_000323868.1 YccS family putative transporter -
  CJV63_RS20830 yccF 4164357..4164803 (-) 447 WP_001261235.1 YccF domain-containing protein -
  CJV63_RS20835 helD 4164926..4166980 (+) 2055 WP_001612761.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24146.03 Da        Isoelectric Point: 9.4081

>NTDB_id=253028 CJV63_RS20820 WP_001612760.1 4161593..4162222(+) (sxy/tfoX) [Escherichia coli O169:H41 strain 2014EL-1345-2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSNGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=253028 CJV63_RS20820 WP_001612760.1 4161593..4162222(+) (sxy/tfoX) [Escherichia coli O169:H41 strain 2014EL-1345-2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTATTTGCGATGGTTTCTAATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A377CFT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment