Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ADEH_RS17875 Genome accession   NC_007760
Coordinates   3974463..3975851 (+) Length   462 a.a.
NCBI ID   WP_011422504.1    Uniprot ID   Q2IF68
Organism   Anaeromyxobacter dehalogenans 2CP-C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3969463..3980851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADEH_RS17855 (Adeh_3451) - 3970248..3970748 (+) 501 WP_011422500.1 hypothetical protein -
  ADEH_RS17860 (Adeh_3452) bioF 3970755..3971948 (-) 1194 WP_011422501.1 8-amino-7-oxononanoate synthase -
  ADEH_RS17865 (Adeh_3453) bioB 3971952..3973037 (-) 1086 WP_011422502.1 biotin synthase BioB -
  ADEH_RS23170 - 3973227..3973379 (+) 153 WP_012527518.1 lmo0937 family membrane protein -
  ADEH_RS17870 (Adeh_3454) - 3973396..3974319 (-) 924 WP_011422503.1 hypothetical protein -
  ADEH_RS17875 (Adeh_3455) radA 3974463..3975851 (+) 1389 WP_011422504.1 DNA repair protein RadA Machinery gene
  ADEH_RS17880 (Adeh_3456) - 3975925..3976203 (+) 279 WP_041453670.1 hypothetical protein -
  ADEH_RS17885 (Adeh_3457) glpK 3976317..3977795 (-) 1479 WP_011422506.1 glycerol kinase GlpK -
  ADEH_RS17890 (Adeh_3458) - 3977799..3978671 (-) 873 WP_011422507.1 alpha/beta hydrolase -
  ADEH_RS17895 (Adeh_3459) - 3978803..3979117 (+) 315 WP_011422508.1 DUF3467 domain-containing protein -
  ADEH_RS17900 (Adeh_3460) - 3979448..3979699 (+) 252 WP_011422509.1 hypothetical protein -
  ADEH_RS17905 (Adeh_3461) - 3979696..3980031 (+) 336 WP_011422510.1 ComEA family DNA-binding protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 48185.36 Da        Isoelectric Point: 6.5074

>NTDB_id=25301 ADEH_RS17875 WP_011422504.1 3974463..3975851(+) (radA) [Anaeromyxobacter dehalogenans 2CP-C]
MSRAAPKIRTVFACAECGQQSPKWLGQCPACKQWNTLQEEIAAPEPKAGAAPRGWGTHAAARPLPLREVEAREEQRQRTG
IGELDRVLGGGVVPGALVLLGGDPGIGKSTLVLAALDRVAQANPDRPVLYVSGEESARQVKLRADRLGVSAANLQVLAET
DALKVLQAVESLAPAAVAVDSIQTQYLPELQSAPGTVTQIREVTARLMALAKTTETPVFLIGHVTKDGSIAGPRVLEHMV
DTVLYFEGGGAHPYRVLRAHKNRFGSASEIGVFEMKAGGLAEVANPSALFLAERPEDAPGSAVTAVLNGTRTVLVEVQAL
VAPTGYGTPRRTALGVDGNRVALLAAVLEKKVGLEILPCDLFVNVAGGLSVDDPAADLAVVAALASSFRERALPARTLVL
GEVGLAGEVRAVSQPGIRLAEAARLGFQRAIVPAASLRHADAPEGIELVGVTTVADALDRLA

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=25301 ADEH_RS17875 WP_011422504.1 3974463..3975851(+) (radA) [Anaeromyxobacter dehalogenans 2CP-C]
ATGTCTCGCGCCGCCCCGAAGATCCGCACCGTGTTCGCCTGCGCGGAGTGCGGGCAGCAGAGCCCGAAGTGGCTCGGCCA
GTGCCCCGCGTGCAAGCAGTGGAACACGCTGCAGGAGGAGATCGCCGCCCCGGAGCCGAAGGCCGGCGCGGCGCCGCGCG
GCTGGGGCACGCACGCGGCGGCGAGGCCGCTGCCGCTCCGCGAGGTGGAGGCGCGCGAGGAGCAGCGGCAGCGCACCGGG
ATCGGCGAGCTGGACCGGGTGCTGGGCGGCGGCGTGGTGCCCGGCGCGCTGGTGCTCCTCGGCGGCGATCCCGGCATCGG
CAAGTCCACCCTCGTGCTCGCGGCGCTGGACCGCGTGGCGCAGGCCAACCCGGACCGTCCGGTGCTCTACGTCTCCGGCG
AGGAGTCGGCGCGACAGGTGAAGCTCCGGGCCGACCGGCTCGGCGTCTCCGCGGCGAACCTGCAAGTGCTCGCCGAGACC
GACGCGCTGAAGGTGCTGCAGGCCGTCGAGTCGCTCGCGCCGGCGGCCGTGGCGGTGGACTCGATCCAGACGCAGTACCT
GCCCGAGCTGCAGAGCGCGCCCGGCACCGTCACGCAGATCCGCGAGGTGACCGCGCGGCTCATGGCGCTCGCCAAGACCA
CCGAGACGCCGGTGTTCCTCATCGGGCACGTCACGAAGGACGGCAGCATCGCCGGCCCGCGCGTGCTCGAGCACATGGTG
GACACGGTCCTCTACTTCGAGGGCGGCGGCGCCCACCCGTACCGCGTGCTCCGCGCCCACAAGAACCGCTTCGGCTCGGC
CAGCGAGATCGGCGTCTTCGAGATGAAGGCGGGCGGGCTGGCCGAGGTGGCGAACCCGTCGGCGCTGTTCCTGGCCGAGC
GCCCCGAGGACGCGCCGGGGAGCGCGGTGACCGCGGTGCTGAACGGCACGCGGACGGTGCTGGTGGAGGTGCAGGCGCTG
GTGGCGCCCACCGGGTACGGGACGCCGCGGCGGACCGCGCTCGGCGTGGACGGCAACCGCGTGGCGCTGCTCGCCGCGGT
GCTCGAGAAGAAGGTCGGGCTGGAGATCCTGCCCTGCGACCTGTTCGTCAACGTGGCCGGCGGCCTGTCGGTGGACGACC
CGGCCGCGGACCTCGCGGTGGTCGCCGCGCTCGCCTCGAGCTTCCGGGAGCGGGCGCTGCCGGCCCGGACGCTGGTGCTG
GGCGAGGTGGGGCTGGCGGGCGAGGTGCGGGCGGTCTCGCAGCCCGGGATCCGCCTGGCGGAGGCGGCCCGCCTCGGCTT
CCAGCGCGCCATCGTCCCCGCCGCGAGCCTCCGGCACGCGGACGCGCCCGAGGGCATCGAGCTGGTGGGCGTCACCACCG
TCGCCGACGCCCTCGACCGGCTCGCGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(12-39)

AAA domain (AAA_25)

(77-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2IF68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.319

97.835

0.522
  radA Streptococcus mitis NCTC 12261

49.011

98.485

0.483
  radA Streptococcus pneumoniae Rx1

49.011

98.485

0.483
  radA Streptococcus pneumoniae D39

49.011

98.485

0.483
  radA Streptococcus pneumoniae R6

49.011

98.485

0.483
  radA Streptococcus pneumoniae TIGR4

49.011

98.485

0.483
  radA Streptococcus mitis SK321

49.011

98.485

0.483

Multiple sequence alignment