Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   CSE15_RS08875 Genome accession   NZ_CP024204
Coordinates   1730975..1731355 (+) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain P-10     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1725975..1736355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSE15_RS08865 (CSE15_08890) - 1727699..1728607 (+) 909 WP_048001486.1 trypsin-like serine peptidase -
  CSE15_RS08870 (CSE15_08895) - 1728753..1730747 (+) 1995 WP_099496531.1 glycosyltransferase family 39 protein -
  CSE15_RS08875 (CSE15_08900) nucA/comI 1730975..1731355 (+) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CSE15_RS08880 (CSE15_08905) - 1731498..1732346 (+) 849 WP_017359585.1 STAS domain-containing protein -
  CSE15_RS08885 (CSE15_08910) - 1732379..1732921 (-) 543 WP_017359584.1 IseA DL-endopeptidase inhibitor family protein -
  CSE15_RS08890 (CSE15_08915) - 1733218..1733661 (+) 444 WP_008343821.1 hypothetical protein -
  CSE15_RS08895 (CSE15_08920) lexA 1733709..1734328 (-) 620 Protein_1693 transcriptional repressor LexA -
  CSE15_RS08900 (CSE15_08925) yneA 1734488..1734799 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  CSE15_RS08905 (CSE15_08930) - 1734817..1735464 (+) 648 WP_017359583.1 recombinase family protein -
  CSE15_RS08910 (CSE15_08935) - 1735534..1735764 (+) 231 WP_008343816.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=252971 CSE15_RS08875 WP_224559893.1 1730975..1731355(+) (nucA/comI) [Bacillus altitudinis strain P-10]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=252971 CSE15_RS08875 WP_224559893.1 1730975..1731355(+) (nucA/comI) [Bacillus altitudinis strain P-10]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGGGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGATGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCAGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556

Multiple sequence alignment