Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CSE15_RS07175 Genome accession   NZ_CP024204
Coordinates   1386342..1386620 (+) Length   92 a.a.
NCBI ID   WP_017359400.1    Uniprot ID   A0A9X0FXL5
Organism   Bacillus altitudinis strain P-10     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1381342..1391620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSE15_RS07150 (CSE15_07170) - 1381432..1381707 (-) 276 WP_008345136.1 hypothetical protein -
  CSE15_RS07155 (CSE15_07175) - 1381852..1383471 (+) 1620 WP_017359403.1 ABC-F family ATP-binding cassette domain-containing protein -
  CSE15_RS07160 (CSE15_07180) - 1383512..1384744 (-) 1233 WP_099496482.1 aminopeptidase -
  CSE15_RS19730 (CSE15_07185) - 1384852..1384983 (-) 132 WP_003210922.1 protein YkpC -
  CSE15_RS07170 (CSE15_07190) mreBH 1385058..1386065 (-) 1008 WP_017359401.1 rod-share determining protein MreBH -
  CSE15_RS07175 (CSE15_07195) abrB 1386342..1386620 (+) 279 WP_017359400.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CSE15_RS07180 (CSE15_07200) - 1386765..1388054 (+) 1290 WP_052320854.1 ATP-binding protein -
  CSE15_RS07185 (CSE15_07205) - 1388082..1388924 (+) 843 WP_099497014.1 gamma-glutamylcyclotransferase -
  CSE15_RS07190 (CSE15_07210) - 1388962..1389630 (+) 669 WP_008345123.1 potassium channel family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=252966 CSE15_RS07175 WP_017359400.1 1386342..1386620(+) (abrB) [Bacillus altitudinis strain P-10]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=252966 CSE15_RS07175 WP_017359400.1 1386342..1386620(+) (abrB) [Bacillus altitudinis strain P-10]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTCT
GCCTGATGACTGGTGAGATTACTTCTGAGAACCACGAGTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGCTAAAAGAGCTTCAAGAAGCCCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543

Multiple sequence alignment