Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   CSE15_RS06935 Genome accession   NZ_CP024204
Coordinates   1345830..1346291 (-) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus altitudinis strain P-10     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1340830..1351291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSE15_RS06915 (CSE15_06935) - 1341233..1342117 (+) 885 WP_017359428.1 cation diffusion facilitator family transporter -
  CSE15_RS19720 - 1342183..1342335 (-) 153 WP_008348040.1 hypothetical protein -
  CSE15_RS06920 (CSE15_06940) - 1342636..1343175 (+) 540 WP_017359427.1 RDD family protein -
  CSE15_RS06925 (CSE15_06945) - 1343300..1344610 (+) 1311 WP_017359426.1 MFS transporter -
  CSE15_RS06930 (CSE15_06950) - 1344684..1345592 (+) 909 WP_008348035.1 chemotaxis protein -
  CSE15_RS06935 (CSE15_06955) kre 1345830..1346291 (-) 462 WP_008356877.1 YkyB family protein Regulator
  CSE15_RS06940 (CSE15_06960) - 1346511..1347407 (-) 897 WP_017359425.1 helix-turn-helix domain-containing protein -
  CSE15_RS06945 (CSE15_06965) - 1347521..1348459 (+) 939 WP_017359424.1 DMT family transporter -
  CSE15_RS06950 (CSE15_06970) - 1348621..1348836 (-) 216 WP_017359423.1 hypothetical protein -
  CSE15_RS19725 - 1349004..1349180 (+) 177 WP_008348014.1 hypothetical protein -
  CSE15_RS06960 (CSE15_06980) - 1349408..1350685 (-) 1278 WP_008348012.1 MFS transporter -
  CSE15_RS06965 (CSE15_06985) - 1350759..1351256 (-) 498 WP_008348009.1 L,D-transpeptidase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=252964 CSE15_RS06935 WP_008356877.1 1345830..1346291(-) (kre) [Bacillus altitudinis strain P-10]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=252964 CSE15_RS06935 WP_008356877.1 1345830..1346291(-) (kre) [Bacillus altitudinis strain P-10]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCATCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCAAAAGCGAATATGTCATTAAATCGAGCGAAACAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTATACAAAACCCGTCTTCAAACGGCTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765

Multiple sequence alignment