Detailed information NTG0025291

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: SYN_RS05550
• Genome accession: NC_007759
• Coordinates: 1198687..1200048 (+)
• Length: 453 a.a.
• NCBI ID: WP_041584775.1
• Uniprot ID: -
• Organism: Syntrophus aciditrophicus SB
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	1179587..1200048	1198687..1200048	within	0

Gene organization within MGE regions

Location: 1179587..1200048

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SYN_RS05450 (SYN_03188)	-	1179587..1179790 (+)	204	WP_041584771.1	hypothetical protein	-
SYN_RS05455 (SYN_00111)	-	1180486..1180980 (-)	495	WP_202943595.1	cupin domain-containing protein	-
SYN_RS05460 (SYN_00112)	-	1181277..1184096 (+)	2820	WP_011417066.1	PAS domain S-box protein	-
SYN_RS05465 (SYN_00113)	-	1184811..1185383 (+)	573	WP_237671314.1	IS110 family transposase	-
SYN_RS05470	-	1185355..1185870 (-)	516	WP_148202497.1	tyrosine-type recombinase/integrase	-
SYN_RS05475 (SYN_00114)	-	1185885..1186064 (+)	180	WP_011417068.1	hypothetical protein	-
SYN_RS16770	-	1186564..1186686 (+)	123	WP_258165160.1	hypothetical protein	-
SYN_RS05480 (SYN_00115)	-	1186763..1187965 (+)	1203	WP_011417069.1	sodium ion-translocating decarboxylase subunit beta	-
SYN_RS05485 (SYN_03189)	-	1187965..1188159 (+)	195	WP_011417070.1	hypothetical protein	-
SYN_RS05490 (SYN_00117)	-	1188588..1189793 (+)	1206	WP_011417071.1	ISL3 family transposase	-
SYN_RS15160 (SYN_03514)	-	1189808..1190308 (-)	501	WP_011417072.1	ankyrin repeat domain-containing protein	-
SYN_RS05500 (SYN_03190)	-	1190687..1191094 (-)	408	WP_148202498.1	hypothetical protein	-
SYN_RS15165 (SYN_00118)	-	1191133..1191771 (-)	639	WP_148202499.1	hypothetical protein	-
SYN_RS16230	-	1192256..1192411 (+)	156	WP_158302932.1	hypothetical protein	-
SYN_RS05510 (SYN_00119)	-	1192392..1192643 (+)	252	WP_158302933.1	VRR-NUC domain-containing protein	-
SYN_RS05515 (SYN_00120)	-	1192723..1192908 (+)	186	WP_011417077.1	hypothetical protein	-
SYN_RS05520 (SYN_03191)	-	1192946..1193173 (-)	228	WP_041584773.1	helix-turn-helix domain-containing protein	-
SYN_RS05525 (SYN_00121)	-	1193432..1194241 (+)	810	WP_148202500.1	tyrosine-type recombinase/integrase	-
SYN_RS05535 (SYN_00122)	-	1194445..1195743 (-)	1299	WP_041584774.1	adenylosuccinate synthase	-
SYN_RS05540 (SYN_00123)	serA	1195797..1197380 (-)	1584	WP_011417081.1	phosphoglycerate dehydrogenase	-
SYN_RS05545 (SYN_00124)	-	1197409..1198523 (-)	1115	Protein_1067	phosphoserine transaminase	-
SYN_RS05550 (SYN_00982)	radA	1198687..1200048 (+)	1362	WP_041584775.1	DNA repair protein RadA	Machinery gene

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 48872.28 Da
• Isoelectric Point: 5.5578

>NTDB_id=25291 SYN_RS05550 WP_041584775.1 1198687..1200048(+) (radA) [Syntrophus aciditrophicus SB]
MKKNRTAFFCRNCGYESPKWLGKCPACNEWNAFIEEEATTIGADSGYGTLQMNENPLSIDTIEANEKERVKTDILEMDRV
LGGGIVEGSAVLVGGDPGIGKSTLLLQMLQKLAEKGRNVLYVSGEESARQIKLRGMRIGAESKNLLVLVETSLENILQHL
KTLKPDVAVIDSIQTVFSTSMGSAPGSVGQVRETAGRLIHFAKKTGVSIFLVGHVTKEGSIAGPKVLEHMVDTVLYFEGD
SGHAYRIIRGMKNRFGPSNEIGVFEMRDSGLVEVLNPSTFFLSERPEAASGSVVVPSMEGTRPILVEIQSLVSPSPLGTP
RRTSIGVDSNRVSLLVAVLDRVCGLHLSSNDIFLNVAGGIRVDEPAADLGIVAAMASSFLERPIDPGTVIFGEVGLTGEV
RGISQMIVRIREAARMGFNRCLLPRTLSQEITELSGIELCRVGSLGELLENLF

Nucleotide

• Length: 1362 bp

>NTDB_id=25291 SYN_RS05550 WP_041584775.1 1198687..1200048(+) (radA) [Syntrophus aciditrophicus SB]
TTGAAAAAGAACAGGACAGCCTTTTTCTGTCGGAACTGTGGTTATGAATCGCCGAAGTGGCTGGGTAAATGTCCCGCCTG
CAACGAATGGAATGCCTTCATCGAAGAAGAGGCGACAACGATCGGCGCAGATTCCGGATACGGAACCCTGCAGATGAATG
AGAACCCCTTGTCCATTGACACCATCGAAGCGAATGAAAAAGAACGCGTCAAAACGGATATCCTGGAAATGGATCGAGTT
CTTGGCGGAGGAATTGTGGAAGGGTCCGCCGTACTGGTCGGTGGTGATCCTGGCATCGGAAAGTCGACCCTGCTCCTGCA
GATGCTGCAGAAACTGGCGGAAAAAGGGCGGAATGTCCTTTATGTTTCCGGAGAGGAGTCCGCGAGGCAGATCAAGCTGA
GGGGTATGAGAATCGGGGCTGAATCGAAAAATCTACTCGTTCTGGTGGAAACGTCGTTAGAAAATATACTCCAACACCTA
AAAACTCTTAAACCGGACGTGGCCGTCATCGATTCCATCCAGACGGTGTTTTCCACCAGTATGGGGTCCGCACCGGGAAG
TGTGGGACAGGTCAGGGAGACGGCGGGTCGACTGATCCATTTTGCAAAAAAAACCGGGGTGTCCATTTTTCTCGTCGGTC
ATGTAACCAAAGAAGGTTCCATTGCCGGTCCGAAAGTACTTGAGCATATGGTGGACACCGTTCTTTATTTCGAAGGGGAT
TCCGGGCATGCCTACCGGATCATCCGCGGCATGAAAAACCGATTCGGGCCGAGCAATGAAATCGGGGTCTTTGAAATGAG
AGACAGCGGCCTGGTGGAAGTTCTCAATCCTTCGACGTTTTTCCTTTCCGAACGTCCGGAAGCCGCCTCAGGATCTGTCG
TCGTTCCAAGCATGGAAGGCACCCGCCCGATTCTTGTGGAGATTCAGTCGCTGGTCAGTCCTTCTCCGCTGGGGACGCCG
AGAAGGACCAGCATAGGCGTTGATTCCAACCGGGTATCCCTGCTGGTTGCCGTTCTTGATCGCGTCTGCGGGCTGCATCT
GAGTTCAAATGATATCTTTCTGAATGTGGCCGGAGGAATCCGGGTGGATGAGCCGGCGGCAGATCTCGGGATTGTGGCGG
CCATGGCCTCCAGTTTTCTGGAGAGGCCGATCGATCCGGGAACGGTTATCTTCGGAGAAGTTGGGTTGACGGGTGAAGTT
CGAGGGATTTCCCAGATGATCGTACGGATTCGGGAGGCGGCGCGTATGGGATTTAATCGATGTCTTCTTCCACGCACCCT
TTCTCAGGAGATTACCGAACTGTCCGGGATAGAGCTCTGCCGTGTCGGGAGCCTGGGAGAGTTGCTGGAGAATCTGTTTT
AA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-35)

• Subunit ChlI of Mg-chelatase (ChlI) (338-425)

• AAA domain (AAA_25) (76-219)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	53.097	99.779	0.53
radA	Streptococcus mitis NCTC 12261	47.903	100	0.479
radA	Streptococcus pneumoniae Rx1	47.903	100	0.479
radA	Streptococcus pneumoniae D39	47.903	100	0.479
radA	Streptococcus pneumoniae R6	47.903	100	0.479
radA	Streptococcus pneumoniae TIGR4	47.903	100	0.479
radA	Streptococcus mitis SK321	47.903	100	0.479