Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   CS376_RS04425 Genome accession   NZ_CP024203
Coordinates   868170..868961 (+) Length   263 a.a.
NCBI ID   WP_015239427.1    Uniprot ID   -
Organism   Bacillus velezensis strain NKG-1     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 863170..873961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS376_RS04400 - 865165..866049 (+) 885 WP_025284444.1 PhzF family phenazine biosynthesis isomerase -
  CS376_RS04405 - 866126..866710 (+) 585 WP_082999099.1 nitroreductase -
  CS376_RS04410 - 866749..866940 (-) 192 WP_003155508.1 YfhD family protein -
  CS376_RS04415 - 867011..867121 (-) 111 WP_003155504.1 YfhE family protein -
  CS376_RS04420 - 867179..868078 (-) 900 WP_025284445.1 TIGR01777 family oxidoreductase -
  CS376_RS04425 recX 868170..868961 (+) 792 WP_015239427.1 recombination regulator RecX Regulator
  CS376_RS04430 - 868968..869282 (+) 315 WP_032867739.1 YfhH family protein -
  CS376_RS04435 - 869426..870619 (+) 1194 WP_025284446.1 MFS transporter -
  CS376_RS04440 - 870659..871048 (-) 390 WP_043020687.1 DUF2606 family protein -
  CS376_RS04445 - 871011..871922 (-) 912 WP_015239429.1 serine protease -
  CS376_RS04450 - 872071..872223 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  CS376_RS04455 - 872347..872616 (+) 270 WP_003155492.1 YfhJ family protein -
  CS376_RS04460 - 872749..873276 (+) 528 WP_015417063.1 SH3 domain-containing protein -
  CS376_RS04465 - 873362..873697 (+) 336 WP_043020688.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30935.10 Da        Isoelectric Point: 5.8035

>NTDB_id=252881 CS376_RS04425 WP_015239427.1 868170..868961(+) (recX) [Bacillus velezensis strain NKG-1]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYSYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=252881 CS376_RS04425 WP_015239427.1 868170..868961(+) (recX) [Bacillus velezensis strain NKG-1]
ATGCCCTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACAGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGTTATGACGGCAGTTATGAAAGCGGAATGAAG
GTTAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795

Multiple sequence alignment