Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   B9S64_RS24880 Genome accession   NZ_CP029342
Coordinates   5500863..5501657 (-) Length   264 a.a.
NCBI ID   WP_028441196.1    Uniprot ID   A0A6N9U4C5
Organism   Streptomyces sp. SM18     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5495863..5506657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9S64_RS24870 (B9S64_24870) - 5496604..5498466 (+) 1863 WP_103491936.1 IucA/IucC family siderophore biosynthesis protein -
  B9S64_RS24875 (B9S64_24875) - 5498571..5500538 (+) 1968 WP_103491937.1 ATP-dependent DNA helicase -
  B9S64_RS24880 (B9S64_24880) dinR/lexA 5500863..5501657 (-) 795 WP_028441196.1 transcriptional repressor LexA Regulator
  B9S64_RS24885 (B9S64_24885) nrdR 5502205..5502720 (+) 516 WP_103491938.1 transcriptional regulator NrdR -
  B9S64_RS24890 (B9S64_24890) - 5502874..5505783 (+) 2910 WP_103491939.1 vitamin B12-dependent ribonucleotide reductase -
  B9S64_RS24895 (B9S64_24895) - 5505944..5506474 (-) 531 WP_103491940.1 TerD family protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28704.53 Da        Isoelectric Point: 7.0792

>NTDB_id=252875 B9S64_RS24880 WP_028441196.1 5500863..5501657(-) (dinR/lexA) [Streptomyces sp. SM18]
MTTTDSATITAQDHRSQSRLEPVHAMNDAAMNPEGPEPARPARSMPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAIMDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=252875 B9S64_RS24880 WP_028441196.1 5500863..5501657(-) (dinR/lexA) [Streptomyces sp. SM18]
GTGACCACCACTGACAGTGCCACCATCACCGCCCAGGACCACCGCTCCCAGAGCCGACTTGAGCCGGTGCACGCCATGAA
TGACGCAGCCATGAACCCGGAGGGGCCAGAGCCCGCCCGCCCCGCGCGGTCCATGCCCGGAAGGCCACCAGGCATCCGCG
CGGACAGTTCGGGGCTGACCGACCGGCAGCGGCGCGTGATCGAGGTCATCCGTGATTCGGTGCAGCGCCGCGGCTACCCC
CCGTCGATGCGGGAGATCGGCCAGGCGGTGGGGCTGTCCAGCACCTCGTCCGTCGCCCATCAGCTGATGGCCCTGGAGCG
CAAGGGGTTCCTGCGCCGGGACCCGCACCGGCCCCGCGCGTACGAGGTGCGTGGGTCCGACCAGCCCAGCACGCAGCCGA
CGGACACGACCGGCAAGCCCGCCGCTTCGTACGTCCCGCTGGTCGGCAGGATCGCGGCCGGTGGCCCGATCCTCGCGGAG
GAGTCCGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTCGTCGGCGACGGTGAGCTGTTCGTCCTCAAGGTCGTCGGCGA
CTCCATGATCGAGGCCGCGATCATGGACGGCGACTGGGTCACCGTGCGCCGCCAGCCGGTCGCGGAGAACGGCGACATCG
TGGCCGCCATGCTGGACGGAGAGGCGACGGTGAAGCGCTTCAAGCGGGAGGACGGCCATGTGTGGCTGCTCCCGCACAAC
TCCGCGTACCAGCCCATTCCGGGTGACGAGGCGACCATCCTTGGCAAGGTCGTGGCAGTGCTCCGGCGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N9U4C5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371