Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CSW64_RS12985 Genome accession   NZ_CP024201
Coordinates   2673696..2675057 (+) Length   453 a.a.
NCBI ID   WP_099622517.1    Uniprot ID   -
Organism   Caulobacter mirabilis strain FWC 38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2668696..2680057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSW64_RS12970 (CSW64_12960) - 2670252..2671739 (+) 1488 WP_099622514.1 replicative DNA helicase -
  CSW64_RS12975 (CSW64_12965) alr 2671827..2672873 (+) 1047 WP_099622515.1 alanine racemase -
  CSW64_RS12980 (CSW64_12970) - 2672870..2673523 (-) 654 WP_172448539.1 Yip1 family protein -
  CSW64_RS12985 (CSW64_12975) radA 2673696..2675057 (+) 1362 WP_099622517.1 DNA repair protein RadA Machinery gene
  CSW64_RS12990 (CSW64_12980) - 2675065..2675682 (+) 618 WP_245863688.1 CvpA family protein -
  CSW64_RS12995 (CSW64_12985) purF 2675679..2677178 (+) 1500 WP_099622518.1 amidophosphoribosyltransferase -
  CSW64_RS13000 (CSW64_12990) - 2677261..2679447 (+) 2187 WP_216361172.1 histidine kinase dimerization/phosphoacceptor domain -containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 46980.69 Da        Isoelectric Point: 6.3001

>NTDB_id=252868 CSW64_RS12985 WP_099622517.1 2673696..2675057(+) (radA) [Caulobacter mirabilis strain FWC 38]
MARDGAVYVCQSCGAVQSKWAGQCPACGAWNSLAEEVTSRPPGALAPTRGSKTRGLAFEGLESETPEPPRIVTGVEEFDR
VCGGGVVPGSAILLGGDPGVGKSTLLLQVVANAAARGASCAYISGEEAVEQIRGRAARMGLAQAPVKLAAETALRDILDG
LKKEKFDLVVIDSIQTLWSDVHEAGPGSVTQVRNCAAELVRLAKKRGVAMILVGHVTKDGQIAGPRVVEHMVDAVLAFEG
ERGYPFRILRGAKNRFGATDEIGVFEMGDAGLSEVRNPSALFLNDGGARAAGAAVFAGIEGSRPVLVEFQALVAPSAYGT
PRRAVVGWDSGRLAMVLAVLESRCGLAFGNRDIYLNVAGGLRISEPAADLAAAAALVSSALEEALPQDCVVFGEVSLSGE
VRSVGRAESRLKEAAKLGFKQALAPTGAGDALKVTGVSRLADAVRRIGEQQWG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=252868 CSW64_RS12985 WP_099622517.1 2673696..2675057(+) (radA) [Caulobacter mirabilis strain FWC 38]
ATGGCCCGCGACGGCGCCGTCTATGTCTGCCAGTCCTGCGGCGCGGTGCAGTCCAAGTGGGCGGGCCAGTGCCCGGCCTG
CGGCGCCTGGAACTCGCTCGCCGAGGAAGTGACCTCCCGCCCGCCTGGCGCGCTGGCCCCGACCCGTGGTTCCAAGACCC
GCGGCCTGGCCTTCGAAGGCCTGGAGAGCGAAACGCCTGAACCGCCCAGGATCGTCACCGGGGTCGAGGAGTTCGACCGC
GTCTGCGGCGGCGGGGTCGTCCCCGGCAGCGCCATCCTGCTCGGCGGCGACCCCGGCGTCGGCAAGTCGACCCTGCTGCT
GCAGGTCGTGGCCAACGCCGCCGCCCGCGGGGCCTCCTGCGCCTACATCTCCGGCGAAGAGGCCGTCGAGCAGATCCGCG
GCCGCGCCGCGCGCATGGGCCTGGCCCAGGCCCCGGTGAAGCTGGCCGCCGAGACCGCCCTGCGCGACATCCTGGACGGG
CTGAAGAAGGAGAAGTTCGACCTCGTCGTCATCGACTCCATCCAGACCCTGTGGAGCGACGTGCACGAGGCCGGCCCCGG
CTCCGTCACCCAGGTGCGCAACTGCGCCGCCGAGCTGGTCCGGCTGGCCAAGAAGCGCGGCGTGGCGATGATCCTGGTCG
GCCACGTCACCAAGGACGGCCAGATCGCGGGTCCGCGCGTGGTCGAGCACATGGTCGACGCGGTCCTCGCCTTCGAGGGG
GAGCGCGGCTACCCGTTCCGCATCCTGCGCGGGGCCAAGAACCGCTTCGGCGCCACCGACGAGATCGGGGTGTTCGAGAT
GGGCGACGCCGGCCTGTCGGAGGTCCGCAACCCCTCCGCCCTGTTCCTGAACGACGGCGGCGCGCGCGCGGCCGGCGCGG
CGGTGTTCGCCGGCATCGAGGGCAGCCGTCCGGTGCTGGTCGAGTTCCAGGCCCTGGTCGCGCCCAGCGCCTACGGCACG
CCGCGGCGGGCGGTGGTCGGCTGGGACAGCGGTCGGCTGGCCATGGTCCTGGCGGTGCTGGAGTCGCGCTGCGGCCTGGC
CTTCGGCAACCGCGACATCTACCTGAACGTGGCCGGCGGCCTGCGCATCAGCGAGCCGGCGGCGGACCTGGCGGCGGCGG
CGGCGCTGGTCTCCTCGGCGCTGGAAGAGGCCCTTCCCCAGGACTGCGTCGTGTTCGGCGAAGTGAGCCTGTCCGGCGAG
GTTCGGTCCGTAGGACGGGCCGAATCCCGCCTCAAGGAAGCCGCGAAGCTGGGCTTCAAACAGGCCCTCGCCCCGACCGG
CGCCGGCGATGCGCTGAAGGTGACGGGCGTCTCCCGCCTGGCCGACGCGGTGCGCCGGATCGGCGAACAACAGTGGGGCT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-221)

Subunit ChlI of Mg-chelatase (ChlI)

(338-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.018

100

0.481
  radA Streptococcus mitis NCTC 12261

45.495

100

0.457
  radA Streptococcus pneumoniae Rx1

45.495

100

0.457
  radA Streptococcus pneumoniae D39

45.495

100

0.457
  radA Streptococcus pneumoniae R6

45.495

100

0.457
  radA Streptococcus pneumoniae TIGR4

45.495

100

0.457
  radA Streptococcus mitis SK321

45.495

100

0.457

Multiple sequence alignment