Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   B9S64_RS16225 Genome accession   NZ_CP029342
Coordinates   3635071..3636201 (-) Length   376 a.a.
NCBI ID   WP_103488869.1    Uniprot ID   A0A6N9UB54
Organism   Streptomyces sp. SM18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3630071..3641201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9S64_RS16215 (B9S64_16215) gyrB 3632007..3634076 (-) 2070 WP_103488871.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  B9S64_RS16220 (B9S64_16220) - 3634445..3634948 (-) 504 WP_103488870.1 DUF721 domain-containing protein -
  B9S64_RS16225 (B9S64_16225) recF 3635071..3636201 (-) 1131 WP_103488869.1 DNA replication/repair protein RecF Machinery gene
  B9S64_RS16230 (B9S64_16230) gnd 3636253..3637131 (-) 879 WP_028441664.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  B9S64_RS16235 (B9S64_16235) dnaN 3637263..3638393 (-) 1131 WP_028441665.1 DNA polymerase III subunit beta -
  B9S64_RS16245 (B9S64_16245) dnaA 3639267..3641042 (-) 1776 WP_103488868.1 chromosomal replication initiator protein DnaA -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40911.63 Da        Isoelectric Point: 7.5639

>NTDB_id=252856 B9S64_RS16225 WP_103488869.1 3635071..3636201(-) (recF) [Streptomyces sp. SM18]
MHVTHLSLADFRSYARVEVPLDPGVTVFVGANGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVVRAAVTQGERS
QLIELELNPGRANRARVNRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSMDLSTLDVWDQHLARVGAELLAQRLDLIATLQPLADKAYADVAPGGGPVTLEYRSSLGADVA
LSRTREELYEQVIAALAQARKQEIERGVTLVGPHRDDLVLGLRGMPAKGYASHGESWSYALALRLASYELLRGEGNEPVL
VLDDVFAELDTRRRERLAQLVAPGEQVLVTAAVDDDVPGVLAGARYAVSEGVVERL

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=252856 B9S64_RS16225 WP_103488869.1 3635071..3636201(-) (recF) [Streptomyces sp. SM18]
ATGCACGTCACGCATCTCTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTCCCTCTCGACCCGGGCGTCACCGT
GTTCGTCGGGGCCAACGGCCAGGGCAAGACCAACCTGGTCGAGGCGGTCGGCTATCTGGCGACGCTCGGCAGCCACCGGG
TCTCGTCCGACGCCCCCCTGGTGCGGATGGGCGCGGAGCGCGCCGTCGTCCGGGCCGCGGTCACCCAGGGCGAGCGCTCG
CAGCTCATCGAGCTGGAGCTCAACCCGGGCCGCGCCAACCGGGCACGCGTCAACCGGTCGTCCCAGGTCAGACCACGCGA
CGTGCTGGGGATAGTCAGGACCGTGCTGTTCGCCCCGGAGGACCTGGCGCTGGTGAAGGGCGACCCGGGGGAGCGCCGCC
GCTTCCTCGACGAGCTGGTCACGGCCCGTTCCCCGCGGATGGCGGGGGTCCGGTCCGACTACGAGCGGGTGCTGAAGCAG
CGCAACACCCTGCTGAAGTCCGCGGCGATGGCCCGCCGCCACGGCGGCAGGTCGATGGACCTGTCCACCCTGGACGTGTG
GGACCAGCACCTGGCCCGGGTCGGCGCGGAGCTGCTCGCCCAGCGGCTCGACCTGATCGCCACCCTCCAGCCGCTGGCCG
ACAAGGCGTACGCCGACGTCGCGCCGGGCGGCGGACCGGTGACCCTGGAGTACCGCAGCTCGCTCGGCGCCGACGTGGCG
CTCTCCCGTACCCGCGAGGAGCTGTACGAGCAGGTGATCGCGGCGCTCGCCCAGGCCCGTAAGCAGGAGATCGAGCGGGG
GGTCACCCTGGTGGGCCCGCACCGCGACGACCTGGTGCTGGGGCTGCGGGGCATGCCCGCGAAGGGGTACGCGAGCCACG
GCGAGTCCTGGTCGTACGCGCTGGCGCTGCGGCTGGCCTCGTACGAGCTGCTGCGCGGCGAGGGCAACGAGCCGGTGCTG
GTCCTGGACGACGTGTTCGCCGAGCTGGACACGCGGCGCCGTGAGCGGCTGGCCCAGCTGGTGGCCCCCGGCGAGCAGGT
GCTGGTGACGGCGGCGGTGGACGACGACGTCCCCGGGGTGCTGGCGGGGGCGCGCTACGCCGTGTCCGAGGGTGTGGTGG
AGCGGCTGTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N9UB54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.202

94.681

0.362