Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   B9S64_RS09285 Genome accession   NZ_CP029342
Coordinates   2070571..2072493 (+) Length   640 a.a.
NCBI ID   WP_103489133.1    Uniprot ID   -
Organism   Streptomyces sp. SM18     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2065571..2077493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9S64_RS09270 (B9S64_09270) - 2066743..2067051 (+) 309 WP_028439814.1 hypothetical protein -
  B9S64_RS09275 (B9S64_09275) - 2067259..2068713 (+) 1455 WP_103489135.1 FGGY family carbohydrate kinase -
  B9S64_RS09280 (B9S64_09280) rcrP 2068838..2070571 (+) 1734 WP_103489134.1 ABC transporter ATP-binding protein Regulator
  B9S64_RS09285 (B9S64_09285) rcrQ 2070571..2072493 (+) 1923 WP_103489133.1 ABC transporter ATP-binding protein Regulator
  B9S64_RS09290 (B9S64_09290) - 2072602..2073666 (-) 1065 WP_103489141.1 RNA polymerase sigma factor -
  B9S64_RS09295 (B9S64_09295) dnaG 2073885..2075792 (-) 1908 WP_109492016.1 DNA primase -
  B9S64_RS09300 (B9S64_09300) - 2075890..2077149 (-) 1260 WP_103488424.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68535.60 Da        Isoelectric Point: 4.9719

>NTDB_id=252836 B9S64_RS09285 WP_103489133.1 2070571..2072493(+) (rcrQ) [Streptomyces sp. SM18]
MAGPGGRAAMGPAERSADFKGSGKRLLGRFSKEKSSLYLMLAAGTLSVALSVVGPKILGRATDLIFAGVVGRQMTAGTTK
EQAVDGLREHGDGGLADMLGGVDFVPGHGIDFGAVGDVLLLALAVYVGAGLLMLVSSRVSIRVINRVVFQLREDLQTKLA
RLPLSYFDRQKRGEVLSRATNDIDNISQTLQQTMGQLVNSLLTIVGVLFMMFWISPLLALVALVTIPLSVLVAARVGKRS
QPQFVAQWQTTGRLNAHIEEMYTGHALVKVFGRQEESAKDFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLLQSGVASAERVFELLDAEEQGPDPVPAESPKEPLGSVSLEKV
SFRYDPEKPLIEDLSLSVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDASRMSRDGLRSGIGMVLQDTWL
FGGTIAENIAYGAAREVTREEIEEAAKAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGAIVEQGTHDELLASDGAYARLYAAQFAAAPAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=252836 B9S64_RS09285 WP_103489133.1 2070571..2072493(+) (rcrQ) [Streptomyces sp. SM18]
ATGGCAGGACCGGGCGGACGGGCGGCCATGGGGCCCGCCGAGCGTTCCGCGGACTTCAAGGGGTCGGGCAAGCGGCTGCT
GGGGCGGTTCAGCAAGGAGAAGTCCTCGCTGTACCTGATGCTGGCGGCCGGCACGCTGAGCGTGGCGCTCTCGGTGGTCG
GGCCGAAGATCCTCGGCCGCGCCACCGACCTCATCTTCGCCGGGGTCGTCGGCCGGCAGATGACGGCGGGGACGACGAAG
GAGCAGGCCGTCGACGGCCTGCGCGAACACGGCGACGGCGGGCTCGCCGACATGCTGGGCGGGGTGGACTTCGTCCCCGG
CCACGGCATCGACTTCGGCGCGGTGGGCGACGTCCTGCTGCTGGCCCTTGCGGTGTACGTCGGCGCGGGGCTGCTGATGC
TGGTCTCCTCCCGGGTGTCGATCCGGGTCATCAACCGGGTCGTCTTCCAGCTCCGCGAGGACCTCCAGACGAAGCTGGCG
CGGTTGCCGCTCTCGTACTTCGACCGGCAGAAGCGCGGTGAGGTGCTGAGCCGGGCGACCAACGACATCGACAACATCTC
GCAGACGCTCCAGCAGACGATGGGCCAGCTGGTCAACTCCCTGCTGACCATCGTCGGCGTGCTGTTCATGATGTTCTGGA
TCTCGCCGCTGCTGGCTCTGGTGGCGCTGGTCACCATCCCGCTCTCGGTGCTGGTCGCGGCGCGGGTCGGGAAGCGGTCG
CAGCCGCAGTTCGTGGCGCAGTGGCAGACGACGGGCAGACTCAACGCGCACATCGAGGAGATGTACACCGGTCACGCCCT
GGTGAAGGTCTTCGGGCGGCAGGAGGAGTCCGCGAAGGACTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCGGTTTCA
AGGCCCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCCAACCTGAACTATGTGCTGGTCGCGGTCGTC
GGCGGGCTGCGGGTGGCGTCCGGCACGCTGTCGATCGGTGACGTGCAGGCGTTCATCCAGTACTCGCGGCAGTTCTCGAT
GCCGCTGACGCAGGTCGCCTCGATGGCCAACCTGCTCCAGTCGGGCGTCGCGTCGGCCGAGCGGGTCTTCGAACTGCTGG
ACGCCGAGGAGCAGGGGCCGGACCCGGTGCCGGCCGAGTCGCCGAAGGAGCCGCTCGGCAGCGTCTCGCTGGAGAAGGTG
TCCTTCCGCTACGACCCGGAGAAGCCGCTCATCGAGGACCTGTCGCTGAGCGTGGAGCCCGGTCAGACGGTCGCGATCGT
CGGCCCGACCGGCGCCGGCAAGACGACCCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGACGGGCGGCCGGATCACCC
TGGACGGGGTGGACGCGTCGAGGATGTCGCGGGACGGACTGCGCTCCGGCATAGGGATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGCACGATCGCGGAGAACATCGCGTACGGCGCGGCGCGCGAGGTCACCCGCGAGGAGATCGAGGAGGCGGCGAA
GGCGGCTCACGCCGACCGCTTCGTGCGCACCCTGCCCGACGGGTACGACACGGTCATCGACGACGAGGGGTCGGGGGTCA
GCGCGGGTGAGAAGCAGTTGATCACCATCGCGCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCCACC
AGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCCGCCTGGCGCACGGTCGTACGAGCTTCGTGAT
CGCCCACCGGCTCTCCACCATCCGGGACGCGGACGTGATCCTGGTGATGGAGAACGGGGCGATCGTCGAACAGGGCACGC
ACGACGAGCTGCTGGCGTCCGACGGTGCCTACGCCCGGCTGTACGCGGCGCAGTTCGCCGCGGCACCGGCCGAGGTGGAC
TGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(42-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.168

81.719

0.361