Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   B9S64_RS09280 Genome accession   NZ_CP029342
Coordinates   2068838..2070571 (+) Length   577 a.a.
NCBI ID   WP_103489134.1    Uniprot ID   -
Organism   Streptomyces sp. SM18     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2063838..2075571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9S64_RS09245 (B9S64_09245) - 2065103..2065333 (+) 231 WP_103505080.1 hypothetical protein -
  B9S64_RS34395 - 2065330..2065755 (+) 426 WP_181012141.1 type II toxin-antitoxin system HicB family antitoxin -
  B9S64_RS09270 (B9S64_09270) - 2066743..2067051 (+) 309 WP_028439814.1 hypothetical protein -
  B9S64_RS09275 (B9S64_09275) - 2067259..2068713 (+) 1455 WP_103489135.1 FGGY family carbohydrate kinase -
  B9S64_RS09280 (B9S64_09280) rcrP 2068838..2070571 (+) 1734 WP_103489134.1 ABC transporter ATP-binding protein Regulator
  B9S64_RS09285 (B9S64_09285) rcrQ 2070571..2072493 (+) 1923 WP_103489133.1 ABC transporter ATP-binding protein Regulator
  B9S64_RS09290 (B9S64_09290) - 2072602..2073666 (-) 1065 WP_103489141.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62473.64 Da        Isoelectric Point: 6.7603

>NTDB_id=252835 B9S64_RS09280 WP_103489134.1 2068838..2070571(+) (rcrP) [Streptomyces sp. SM18]
MLITLLRAFLGPYRKPILLLVALQFLQTCASLYLPSLNADIIDNGVVRGDTGYILEFGGVMIAVSVVQVLCNIGAVYFGA
RTASALGRDVRASVFARVQSFSAREVGRFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCVGGIVMALGQDVPLSAV
LLAVVPVLGIAVSLIVKRMRPLFRTMQTRLDTVNRVLREQITGNRVIRAFVRDTYEEKRFRGANTELTAVALSTGRLMAL
MFPTVMTVVNVSSVAVIWFGAHRIDSGGMEIGALTAFIAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLGTDSSVVP
PKAPVTELRTHGHLEIRGAEFRYPGAEEPVLRAVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVGGRDVR
TLDPALLAESVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVERLEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVRRPEIYLFDDSFSALDYATDSALRAALSRETAGATVVIVAQRVSTIRDADRILVLDEGRLVGTGSHRELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=252835 B9S64_RS09280 WP_103489134.1 2068838..2070571(+) (rcrP) [Streptomyces sp. SM18]
GTGCTCATAACACTCCTGCGGGCTTTCCTGGGCCCGTACAGAAAACCGATTCTGCTGCTGGTGGCACTCCAGTTCCTCCA
GACCTGCGCCAGCCTCTACCTGCCCAGCCTCAACGCGGACATCATCGACAACGGTGTCGTACGGGGGGACACGGGCTACA
TCCTGGAGTTCGGCGGCGTGATGATCGCCGTCAGCGTCGTCCAGGTCCTCTGCAACATCGGCGCGGTGTACTTCGGCGCC
CGTACCGCGTCCGCACTCGGTCGTGACGTGCGGGCGTCGGTCTTCGCCCGGGTGCAGTCCTTCTCAGCGCGTGAGGTGGG
GCGGTTCGGCGCGCCCTCGCTGATCACCCGGACGACCAACGACGTCCAGCAGATCCAGATGCTCGTCCTGATGACGTTCA
CGCTGATGGTGTCGGCCCCCATCATGTGCGTCGGCGGCATCGTGATGGCGCTCGGCCAGGACGTCCCGCTGTCGGCGGTG
CTGCTGGCGGTGGTGCCGGTGCTGGGGATCGCGGTGAGCCTCATCGTGAAGCGCATGCGGCCGCTCTTCCGCACGATGCA
GACCCGGCTGGACACGGTGAACCGGGTGCTGCGTGAGCAGATCACCGGTAACCGGGTCATTCGCGCCTTCGTCCGCGACA
CCTACGAGGAGAAGCGTTTCCGCGGTGCCAACACCGAGCTGACCGCCGTCGCCCTGTCGACCGGCCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTGGTGAACGTCTCGTCCGTCGCCGTGATCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGGAGATCGGCGCGCTGACCGCGTTCATCGCGTACCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGTGCCGAGGTCTGCGCCGAGCGCATACAGGAGGTCCTGGGCACCGATTCGAGCGTGGTCCCG
CCGAAGGCCCCGGTCACCGAGCTGCGGACCCATGGGCATCTGGAGATACGGGGCGCCGAGTTCCGCTACCCGGGCGCCGA
GGAACCGGTGCTGCGGGCGGTGGACCTGGTGGCACGCCCCGGTGAGACGACCGCGGTCATAGGGTCCACGGGCAGCGGGA
AGTCGACGCTGCTCGGGCTCGTACCGAGGCTGTTCGACGCGACCGGCGGTGAGGTGCTCGTCGGCGGCAGGGACGTGCGG
ACCCTGGACCCGGCGCTGCTGGCGGAGTCGGTGAGCCTGGTCCCGCAGAAGCCGTACCTCTTCTCCGGGACGGTCGCCAC
GAACCTGCGGTACGGGAACCCCGACGCCACCGACGAGGAGCTGTGGCACGCCCTGGAGGTGGCCCAGGCGAAGGAGTTCG
TGGAGCGGCTGGAGCACGGCCTCGACGCCCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGCCAGCGGCAGCGGCTC
GCCATCGCGCGGACGCTGGTGCGGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CTCGGCGCTGCGCGCCGCCCTGTCGCGGGAGACGGCCGGGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACGATCC
GTGACGCCGACCGGATCCTGGTGCTGGACGAGGGCCGCCTGGTCGGCACGGGCAGCCACCGCGAACTGATGGACGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.587

100

0.399