Detailed information NTG0252641

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY90_RS18240
• Genome accession: NZ_CP029327
• Coordinates: 3771899..3772891 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A37
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3766899..3777891

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY90_RS18215 (AOY90_19290)	ygbM	3767536..3768312 (+)	777	WP_001136913.1	HPr family phosphocarrier protein	-
AOY90_RS18220 (AOY90_19295)	ygbN	3768401..3769765 (+)	1365	WP_000104433.1	GntP family transporter	-
AOY90_RS18225 (AOY90_19300)	-	3769908..3770952 (-)	1045	Protein_3557	MBL fold metallo-hydrolase	-
AOY90_RS18235 (AOY90_19305)	-	3771177..3771728 (+)	552	WP_001179443.1	flavodoxin family protein	-
AOY90_RS18240 (AOY90_19310)	rpoS	3771899..3772891 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY90_RS18245 (AOY90_19315)	nlpD	3772954..3774048 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AOY90_RS18250 (AOY90_19320)	pcm	3774233..3774859 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AOY90_RS18255 (AOY90_19325)	surE	3774853..3775614 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AOY90_RS18260 (AOY90_19330)	truD	3775595..3776644 (-)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
AOY90_RS18265 (AOY90_19335)	ispF	3776641..3777120 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY90_RS18270 (AOY90_19340)	ispD	3777120..3777830 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=252641 AOY90_RS18240 WP_000081550.1 3771899..3772891(-) (rpoS) [Escherichia coli strain A37]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=252641 AOY90_RS18240 WP_000081550.1 3771899..3772891(-) (rpoS) [Escherichia coli strain A37]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715