Detailed information NTG0252637

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: CSW01_RS13570
• Genome accession: NZ_CP024162
• Coordinates: 2875460..2876467 (-)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain E7946
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2870460..2881467

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CSW01_RS13545 (CSW01_13500)	rraA	2871035..2871550 (-)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-
CSW01_RS13550 (CSW01_13505)	-	2871625..2872542 (-)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
CSW01_RS13555 (CSW01_13510)	hslU	2872646..2873977 (-)	1332	WP_001293370.1	HslU--HslV peptidase ATPase subunit	-
CSW01_RS13560 (CSW01_13515)	hslV	2874043..2874600 (-)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
CSW01_RS13565 (CSW01_13520)	-	2874737..2875288 (-)	552	WP_001884022.1	SPOR domain-containing protein	-
CSW01_RS13570 (CSW01_13525)	cytR	2875460..2876467 (-)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
CSW01_RS13575 (CSW01_13530)	priA	2876773..2878977 (-)	2205	WP_001247858.1	primosomal protein N'	-
CSW01_RS13580 (CSW01_13535)	rpmE	2879232..2879450 (+)	219	WP_000643446.1	50S ribosomal protein L31	-
CSW01_RS13585 (CSW01_13540)	-	2879758..2881035 (+)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
CSW01_RS13590 (CSW01_13545)	metJ	2881146..2881463 (-)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=252637 CSW01_RS13570 WP_000224452.1 2875460..2876467(-) (cytR) [Vibrio cholerae strain E7946]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=252637 CSW01_RS13570 WP_000224452.1 2875460..2876467(-) (cytR) [Vibrio cholerae strain E7946]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904