Detailed information NTG0252608

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CSW01_RS02845
• Genome accession: NZ_CP024162
• Coordinates: 563473..564480 (+)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae strain E7946
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 558473..569480

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CSW01_RS02810 (CSW01_02800)	ftsB	558524..558808 (+)	285	WP_001263189.1	cell division protein FtsB	-
CSW01_RS02815 (CSW01_02805)	ispD	558805..559503 (+)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CSW01_RS02820 (CSW01_02810)	ispF	559500..559976 (+)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CSW01_RS02825 (CSW01_02815)	truD	560006..561091 (+)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
CSW01_RS02830 (CSW01_02820)	surE	561093..561845 (+)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
CSW01_RS02835 (CSW01_02825)	-	561838..562464 (+)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
CSW01_RS02840 (CSW01_02830)	nlpD	562464..563399 (+)	936	WP_000177568.1	murein hydrolase activator NlpD	-
CSW01_RS02845 (CSW01_02835)	rpoS	563473..564480 (+)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
CSW01_RS02850 (CSW01_02840)	mutS	564573..567161 (-)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
CSW01_RS02855 (CSW01_02845)	cysM	567429..568316 (-)	888	WP_001279365.1	cysteine synthase CysM	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=252608 CSW01_RS02845 WP_000116737.1 563473..564480(+) (rpoS) [Vibrio cholerae strain E7946]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=252608 CSW01_RS02845 WP_000116737.1 563473..564480(+) (rpoS) [Vibrio cholerae strain E7946]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1