Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CR540_RS16770 Genome accession   NZ_CP024155
Coordinates   3236895..3237524 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 14EC047     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3231895..3242524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR540_RS16755 (CR540_17560) helD 3232137..3234191 (-) 2055 WP_001315388.1 DNA helicase IV -
  CR540_RS16760 (CR540_17565) yccF 3234314..3234760 (+) 447 WP_001261235.1 YccF domain-containing protein -
  CR540_RS16765 (CR540_17570) yccS 3234770..3236932 (+) 2163 WP_000875044.1 YccS family putative transporter -
  CR540_RS16770 (CR540_17575) sxy/tfoX 3236895..3237524 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CR540_RS16775 (CR540_17580) sulA 3237743..3238252 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CR540_RS16780 (CR540_17590) ompA 3238609..3239661 (+) 1053 WP_000750419.1 porin OmpA -
  CR540_RS16785 (CR540_17595) matP 3239736..3240188 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  CR540_RS16790 (CR540_17600) ycbZ 3240374..3242134 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=252558 CR540_RS16770 WP_000839153.1 3236895..3237524(-) (sxy/tfoX) [Escherichia coli strain 14EC047]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=252558 CR540_RS16770 WP_000839153.1 3236895..3237524(-) (sxy/tfoX) [Escherichia coli strain 14EC047]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment