Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   Y75_RS01260 Genome accession   NC_007779
Coordinates   263480..263956 (-) Length   158 a.a.
NCBI ID   WP_000811693.1    Uniprot ID   A0AA91EE93
Organism   Escherichia coli str. K-12 substr. W3110     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 258480..268956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y75_RS01235 (Y75_p0233) proB 259612..260715 (+) 1104 WP_001285288.1 glutamate 5-kinase -
  Y75_RS01240 (Y75_p0234) proA 260727..261980 (+) 1254 WP_000893278.1 glutamate-5-semialdehyde dehydrogenase -
  Y75_RS01250 (Y75_p0235) ykfI 262552..262893 (-) 342 WP_000854672.1 type IV toxin-antitoxin system toxin YkfI -
  Y75_RS01255 (Y75_p0236) yafW 262914..263231 (-) 318 WP_000070395.1 type IV toxin-antitoxin system antitoxin YafW -
  Y75_RS23085 ykfH 263250..263471 (-) 222 WP_000691994.1 DUF987 domain-containing protein -
  Y75_RS01260 (Y75_p0238) radC 263480..263956 (-) 477 WP_000811693.1 JAB domain-containing protein Machinery gene
  Y75_RS01265 (Y75_p0239) yafX 263972..264430 (-) 459 WP_000211838.1 antirestriction protein -
  Y75_RS01270 (Y75_p0240) ykfF 264528..264767 (-) 240 WP_000194654.1 DUF905 domain-containing protein -
  Y75_RS01275 (Y75_p0241) ykfB 264844..265311 (-) 468 WP_001547765.1 protein YkfB -
  Y75_RS24725 yafY 265334..265777 (-) 444 WP_000824223.1 YfjS/YafY family lipoprotein -
  Y75_RS24730 ypjK 265777..266016 (-) 240 WP_032243554.1 protein YpjK -
  Y75_RS24735 - 265991..266191 (-) 201 Protein_249 DeoR family transcriptional regulator -
  Y75_RS01290 (Y75_p0243) yafZ 266408..267229 (-) 822 WP_000197389.1 DUF932 domain-containing protein -
  Y75_RS01295 (Y75_p0244) ykfA 267321..268184 (-) 864 WP_001065553.1 GTPase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18098.78 Da        Isoelectric Point: 8.7508

>NTDB_id=25255 Y75_RS01260 WP_000811693.1 263480..263956(-) (radC) [Escherichia coli str. K-12 substr. W3110]
MKQLSFLPGEMTPQDRRLIQRALRALDRHLHEPGVAFTSTHAVREWLRLHMAALEREEFRVLYLDNQNQLIAHETLFTGT
INRTEVHPREVVKRALHFNAAAVILAHNHPSGETTPSQADKTLTQRLVQVLQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=25255 Y75_RS01260 WP_000811693.1 263480..263956(-) (radC) [Escherichia coli str. K-12 substr. W3110]
ATGAAACAGCTTTCCTTTTTACCCGGCGAGATGACGCCACAGGACCGGCGTCTCATTCAGCGGGCGCTCAGGGCTCTGGA
CCGCCACCTGCATGAGCCCGGCGTAGCCTTCACCTCTACCCACGCCGTACGTGAATGGCTGCGACTGCATATGGCCGCGC
TTGAGCGGGAAGAGTTCCGGGTGTTGTATCTGGACAACCAGAATCAGTTGATTGCCCATGAAACGCTCTTCACCGGCACG
ATTAACCGCACCGAGGTGCATCCCCGGGAGGTGGTCAAACGTGCTCTGCACTTCAACGCGGCGGCGGTGATACTCGCGCA
TAACCATCCTTCCGGCGAGACGACACCTAGCCAGGCCGACAAAACCCTCACGCAGCGACTGGTTCAGGTGCTTCAGCTGG
TGGATATCCGTGTCCCTGACCATCTGATTGTCGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA91EE93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38