Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   DG474_RS07235 Genome accession   NZ_CP029257
Coordinates   1476822..1479038 (-) Length   738 a.a.
NCBI ID   WP_255778966.1    Uniprot ID   -
Organism   Streptococcus oralis strain CCUG 53468     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1471822..1484038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS07215 (DG474_07340) - 1472072..1472773 (-) 702 WP_061415075.1 M57 family metalloprotease -
  DG474_RS07220 (DG474_07345) - 1472878..1473657 (-) 780 WP_255777877.1 alpha/beta hydrolase family protein -
  DG474_RS07225 (DG474_07350) - 1473726..1475387 (-) 1662 WP_255777878.1 ribonuclease J -
  DG474_RS07230 (DG474_07355) - 1475889..1476536 (-) 648 WP_255777879.1 CHAP domain-containing protein -
  DG474_RS07235 (DG474_07360) recJ 1476822..1479038 (-) 2217 WP_255778966.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  DG474_RS07240 (DG474_07365) - 1479216..1479974 (+) 759 WP_001229587.1 amino acid ABC transporter ATP-binding protein -
  DG474_RS07245 (DG474_07370) - 1479985..1480779 (+) 795 WP_125391104.1 transporter substrate-binding domain-containing protein -
  DG474_RS07250 (DG474_07375) - 1480792..1481469 (+) 678 WP_042902756.1 amino acid ABC transporter permease -
  DG474_RS07255 (DG474_07380) - 1481479..1482138 (+) 660 WP_049518904.1 amino acid ABC transporter permease -
  DG474_RS07260 (DG474_07385) - 1482268..1483050 (+) 783 WP_084868397.1 DUF4037 domain-containing protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 82288.76 Da        Isoelectric Point: 4.3378

>NTDB_id=252545 DG474_RS07235 WP_255778966.1 1476822..1479038(-) (recJ) [Streptococcus oralis strain CCUG 53468]
MITPTYEWQFAPQVEDADFTKIAKKAGLGPEVARLLFERGIQNEESLKKFLEPSLEDLHDPYLLHDMDKAVERIRQAIEE
GENILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDGYGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQ
SMGVDVIVTDHHSMPETLPDAYAIVHPEHPDADYPFKQLAGCGVAFKLACALLEEVQVELLDLVAIGTIADMVSLTDENR
ILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLDDPNPAIDLLTGFDDEEAHEIALMIHQKN
EERKEIVQSIYEEAKTMVDPEKKVQVLAKEGWNPGVLGIVAGRLLEELGQTVIVLNIEEGRAKGSARSVEAVDIFEALDP
HRDLFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLETLSLETVKSFERLAPFGMDNQKP
VFYIKDFHVESARTMGAGNAHLKLKISKGEASFEVVAFGQGRWATEFAQTKNLELAVTLSVNQWNGQTALQLMMVDARVE
GVQLFNIRGKNAVLPEGIPVLDFSGEVPDLATSDAVVVKNIPEDITLLKAIFQEQHFSAVYFKNDIDKAYYLTGYGTREQ
FAKLYKTIYQFPEFDIRYKLKDLAVYLNIQQILLVKMIQVFEELGFVTIKDGVMTVNKEAPKREIADSQIYQNLKQTVKN
QEMMALGTVQEMYDFLME

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=252545 DG474_RS07235 WP_255778966.1 1476822..1479038(-) (recJ) [Streptococcus oralis strain CCUG 53468]
TTGATAACTCCTACTTATGAATGGCAGTTTGCCCCGCAGGTTGAAGATGCGGATTTTACAAAGATAGCCAAGAAGGCTGG
ACTGGGTCCTGAGGTGGCTCGGTTATTATTTGAAAGAGGGATTCAGAACGAAGAAAGTCTAAAGAAGTTCTTAGAACCTT
CTTTGGAAGACTTGCACGATCCCTATCTGCTCCATGATATGGACAAGGCAGTGGAGCGGATTCGTCAGGCCATTGAAGAA
GGGGAAAACATCCTCATCTATGGAGACTATGATGCGGATGGTATGACTTCGGCCTCTATTGTTAAGGAAAGTTTGGAACA
GCTTGGCGCCGAGTGCCGTGTTTACCTGCCCAATCGCTTTACAGATGGCTATGGCCCTAATGCCAGTGTCTATAAATACT
TTATCGAGCAAGAGGGAATTTCCTTGATTGTGACAGTGGACAATGGGGTTGCAGGTCACGAGGCTATTGAACTAGCTCAG
TCTATGGGAGTAGATGTCATTGTGACCGACCACCATTCCATGCCGGAAACCTTGCCAGATGCTTATGCGATTGTTCATCC
CGAGCATCCAGATGCGGACTATCCTTTTAAACAGTTGGCTGGTTGCGGAGTGGCTTTCAAGCTGGCTTGCGCTCTTTTAG
AAGAAGTGCAAGTGGAATTGCTTGATTTGGTCGCTATCGGTACCATTGCGGATATGGTAAGTTTGACGGATGAAAACCGT
ATTTTGGTTCAATATGGTCTGGAAATGTTGGGACATACTCAGCGCATCGGTCTACAAGAAATGCTAGACATGGCTGGGAT
TGCTGCGAATGAAGTGACAGAAGAAACGGTTGGATTTCAGATTGCCCCTCGTTTAAATGCCTTGGGGCGCTTGGACGATC
CTAATCCCGCCATTGATTTGTTGACTGGATTTGACGATGAGGAAGCGCATGAGATTGCCCTCATGATTCACCAGAAAAAC
GAAGAGCGCAAGGAAATCGTTCAGTCAATCTACGAAGAAGCTAAGACCATGGTGGATCCTGAGAAGAAGGTCCAGGTTTT
GGCCAAGGAAGGCTGGAATCCTGGCGTTCTGGGTATCGTTGCTGGTCGTTTGTTGGAAGAACTAGGGCAGACAGTCATCG
TTCTTAATATAGAAGAAGGTCGCGCCAAGGGTAGTGCTCGTAGTGTGGAAGCGGTCGATATTTTTGAAGCTCTGGATCCC
CATCGAGACCTCTTTATCGCCTTTGGCGGCCATGCTGGTGCAGCTGGAATGACGCTGGAAGTTGAGAAACTTTCAGATTT
ATCTCAGGTTTTAGAAGACTATGTCCGTGAAAAGGGTGCAGATGCTGGTGGCAAGAATAAGTTAAATCTAGATGAAGAGT
TGGATTTGGAGACTCTTAGTTTAGAAACGGTTAAAAGCTTTGAACGCTTGGCACCCTTTGGGATGGATAATCAGAAACCT
GTCTTTTATATCAAGGATTTTCATGTCGAAAGTGCCCGTACTATGGGAGCAGGCAATGCCCACCTCAAACTAAAAATTTC
CAAGGGTGAGGCGAGCTTTGAAGTGGTGGCCTTTGGACAAGGTAGATGGGCAACAGAGTTTGCTCAAACCAAAAACTTAG
AATTGGCAGTCACCCTGTCTGTCAATCAATGGAATGGCCAAACTGCCCTCCAGTTGATGATGGTGGATGCGCGTGTGGAA
GGCGTTCAACTCTTTAACATTCGTGGGAAGAATGCAGTCTTGCCAGAGGGAATTCCAGTCTTGGATTTCTCTGGAGAGGT
GCCAGATCTAGCGACCAGCGACGCGGTTGTTGTGAAAAACATTCCTGAGGATATTACCTTGCTGAAGGCCATTTTTCAGG
AACAGCATTTCTCTGCTGTCTATTTCAAAAATGACATTGACAAGGCCTACTATCTGACAGGTTATGGAACTAGAGAGCAG
TTTGCAAAATTGTACAAGACCATTTACCAGTTCCCAGAGTTTGATATTCGCTACAAGCTCAAAGATTTGGCGGTTTATCT
CAATATCCAACAAATCTTGCTGGTCAAGATGATCCAAGTATTTGAGGAACTGGGCTTTGTAACGATCAAAGATGGTGTCA
TGACAGTCAATAAAGAAGCGCCGAAAAGGGAAATAGCTGATAGTCAGATTTACCAAAATCTCAAGCAAACTGTAAAAAAT
CAAGAAATGATGGCGCTGGGTACCGTGCAAGAAATGTATGATTTTTTAATGGAGTAA

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(593-735)

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(451-556)

DHHA1 domain (DHHA1)

(317-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

96.07

100

0.961
  recJ Bacillus subtilis subsp. subtilis str. 168

37.176

100

0.389