Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | CR539_RS09405 | Genome accession | NZ_CP024147 |
| Coordinates | 1837393..1838022 (+) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Escherichia coli strain 14EC033 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1809544..1847194 | 1837393..1838022 | within | 0 |
Gene organization within MGE regions
Location: 1809544..1847194
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CR539_RS09265 (CR539_09250) | ssuD | 1809750..1810895 (-) | 1146 | WP_032280651.1 | FMNH2-dependent alkanesulfonate monooxygenase | - |
| CR539_RS09270 (CR539_09255) | ssuA | 1810892..1811851 (-) | 960 | WP_032280652.1 | aliphatic sulfonate ABC transporter substrate-binding protein SsuA | - |
| CR539_RS09275 (CR539_09260) | ssuE | 1811844..1812419 (-) | 576 | WP_001263920.1 | NADPH-dependent FMN reductase | - |
| CR539_RS09285 (CR539_09270) | elfA | 1812775..1813314 (+) | 540 | WP_000750296.1 | fimbrial protein | - |
| CR539_RS09290 (CR539_09275) | elfD | 1813397..1814098 (+) | 702 | WP_000845152.1 | molecular chaperone | - |
| CR539_RS09295 (CR539_09280) | - | 1814123..1814587 (+) | 465 | Protein_1676 | FimD/PapC N-terminal domain-containing protein | - |
| CR539_RS09300 (CR539_09285) | - | 1814679..1815907 (+) | 1229 | WP_088895425.1 | IS3-like element IS2 family transposase | - |
| CR539_RS09305 (CR539_09290) | - | 1815921..1818059 (+) | 2139 | Protein_1678 | fimbrial biogenesis usher protein | - |
| CR539_RS09310 (CR539_09295) | elfG | 1818050..1819120 (+) | 1071 | WP_032280654.1 | fimbrial protein | - |
| CR539_RS09315 (CR539_09300) | ycbU | 1819132..1819674 (+) | 543 | WP_077757361.1 | fimbrial protein | - |
| CR539_RS09320 (CR539_09305) | ycbV | 1819682..1820149 (+) | 468 | WP_099145295.1 | fimbrial protein | - |
| CR539_RS09325 (CR539_09310) | ycbF | 1820163..1820900 (+) | 738 | WP_160438344.1 | fimbrial chaperone | - |
| CR539_RS09330 (CR539_09315) | pyrD | 1821011..1822021 (+) | 1011 | WP_001312721.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| CR539_RS09335 (CR539_09320) | zapC | 1822195..1822737 (+) | 543 | WP_001295353.1 | cell division protein ZapC | - |
| CR539_RS09340 (CR539_09325) | ycbX | 1822734..1823843 (-) | 1110 | WP_032280661.1 | 6-N-hydroxylaminopurine resistance protein YcbX | - |
| CR539_RS09345 (CR539_09330) | rlmKL | 1824087..1826195 (+) | 2109 | WP_032280662.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| CR539_RS09350 (CR539_09335) | uup | 1826207..1828114 (+) | 1908 | WP_000053083.1 | ABC transporter ATP-binding protein | - |
| CR539_RS09355 (CR539_09340) | pqiA | 1828244..1829497 (+) | 1254 | WP_000333170.1 | membrane integrity-associated transporter subunit PqiA | - |
| CR539_RS09360 (CR539_09345) | pqiB | 1829502..1831142 (+) | 1641 | WP_000445541.1 | intermembrane transport protein PqiB | - |
| CR539_RS09365 (CR539_09350) | pqiC | 1831139..1831702 (+) | 564 | WP_000759110.1 | membrane integrity-associated transporter subunit PqiC | - |
| CR539_RS09370 (CR539_09355) | rmf | 1831958..1832125 (+) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| CR539_RS09375 (CR539_09360) | fabA | 1832195..1832713 (-) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| CR539_RS09380 (CR539_09365) | ycbZ | 1832782..1834542 (-) | 1761 | WP_032280665.1 | Lon protease family protein | - |
| CR539_RS09385 (CR539_09370) | matP | 1834728..1835180 (+) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| CR539_RS09390 (CR539_09375) | ompA | 1835256..1836308 (-) | 1053 | WP_032280676.1 | porin OmpA | - |
| CR539_RS09400 (CR539_09385) | sulA | 1836665..1837174 (-) | 510 | WP_000288706.1 | SOS-induced cell division inhibitor SulA | - |
| CR539_RS09405 (CR539_09390) | sxy/tfoX | 1837393..1838022 (+) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| CR539_RS09410 (CR539_09395) | yccS | 1837985..1840147 (-) | 2163 | WP_136747830.1 | YccS family putative transporter | - |
| CR539_RS09415 (CR539_09400) | yccF | 1840157..1840603 (-) | 447 | WP_001261235.1 | YccF domain-containing protein | - |
| CR539_RS09420 (CR539_09405) | helD | 1840726..1842780 (+) | 2055 | WP_101969370.1 | DNA helicase IV | - |
| CR539_RS09425 (CR539_09410) | mgsA | 1842812..1843270 (-) | 459 | WP_032280666.1 | methylglyoxal synthase | - |
| CR539_RS09430 (CR539_09415) | yccT | 1843366..1844028 (-) | 663 | WP_000847791.1 | DUF2057 family protein | - |
| CR539_RS09435 (CR539_09420) | yccU | 1844201..1844614 (+) | 414 | WP_000665217.1 | CoA-binding protein | - |
| CR539_RS09440 (CR539_09425) | hspQ | 1844659..1844976 (-) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| CR539_RS09445 (CR539_09430) | rlmI | 1845034..1846224 (-) | 1191 | WP_032280667.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| CR539_RS09450 (CR539_09435) | yccX | 1846319..1846597 (+) | 279 | WP_032280668.1 | acylphosphatase | - |
| CR539_RS09455 (CR539_09440) | tusE | 1846594..1846923 (-) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=252531 CR539_RS09405 WP_000839153.1 1837393..1838022(+) (sxy/tfoX) [Escherichia coli strain 14EC033]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=252531 CR539_RS09405 WP_000839153.1 1837393..1838022(+) (sxy/tfoX) [Escherichia coli strain 14EC033]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |