Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DG474_RS04360 Genome accession   NZ_CP029257
Coordinates   883037..884704 (+) Length   555 a.a.
NCBI ID   WP_255778890.1    Uniprot ID   -
Organism   Streptococcus oralis strain CCUG 53468     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 878037..889704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS04330 (DG474_04425) udk 878629..879267 (+) 639 WP_049518807.1 uridine kinase -
  DG474_RS04335 (DG474_04430) xseA 879396..880736 (+) 1341 WP_255778888.1 exodeoxyribonuclease VII large subunit -
  DG474_RS04340 (DG474_04435) - 880714..880926 (+) 213 WP_000043226.1 exodeoxyribonuclease VII small subunit -
  DG474_RS04345 (DG474_04440) - 880923..881798 (+) 876 WP_000743829.1 polyprenyl synthetase family protein -
  DG474_RS04350 (DG474_04445) - 881791..882606 (+) 816 WP_255778889.1 TlyA family RNA methyltransferase -
  DG474_RS04355 (DG474_04450) - 882599..883030 (+) 432 WP_070697264.1 arginine repressor -
  DG474_RS04360 (DG474_04455) recN 883037..884704 (+) 1668 WP_255778890.1 DNA repair protein RecN Machinery gene
  DG474_RS04365 (DG474_04460) - 884705..885433 (+) 729 WP_255778891.1 metallophosphoesterase family protein -
  DG474_RS04370 (DG474_04465) lepA 885512..887335 (+) 1824 WP_255778894.1 translation elongation factor 4 -
  DG474_RS04375 (DG474_04470) - 887480..888103 (+) 624 WP_255778895.1 hypothetical protein -
  DG474_RS04380 (DG474_04475) dprA/cilB/dalA 888186..889034 (+) 849 WP_255778896.1 DNA-processing protein DprA Machinery gene

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62685.10 Da        Isoelectric Point: 4.5309

>NTDB_id=252517 DG474_RS04360 WP_255778890.1 883037..884704(+) (recN) [Streptococcus oralis strain CCUG 53468]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNLMLGARATTDVIRHSAPKAEIEGLFSVENSRLLQELF
DEQGLELGDEIIIRREILQNGRSVSRVNGQMVNLSVLRAIGQHLVDIHGQHDQEELMRPQLHIQMLDEFGDAAFLELKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQVAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNEE
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDITKRLEDIIEDLDFDGNRLMQVENRLDLINTITRKYGGTV
DDVLLYFAKITDEYNLLTGNNLSSEDMEAELKKLEVNLVDLAGQLASARHDLALQLEAEIKQELQDLYMEKAQFQVRFSK
SKFSREGNEAVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSTVRLLTLEERVEEVAKMLAGENVTEAALTQARELLQTRMK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=252517 DG474_RS04360 WP_255778890.1 883037..884704(+) (recN) [Streptococcus oralis strain CCUG 53468]
ATGTTACTTGAAATTTCAATAAAAAACTTTGCCATTATTGAGGCGATTTCGCTCAATTTTGAAAAGGGTATGACTGTTTT
GACCGGGGAAACGGGTGCTGGAAAGTCTATCATTATCGACGCTATGAATCTCATGTTGGGGGCTCGTGCAACGACAGACG
TTATTCGCCACAGTGCGCCAAAGGCAGAGATTGAGGGGCTTTTCTCGGTTGAAAACAGTCGCCTTTTACAGGAACTTTTT
GATGAGCAAGGTTTAGAATTGGGCGATGAGATCATCATCCGGCGTGAAATTCTGCAAAACGGTCGGAGTGTTAGTCGCGT
GAATGGTCAGATGGTCAATCTTTCTGTCTTGCGTGCTATAGGGCAACATCTTGTAGATATCCATGGTCAGCATGACCAAG
AGGAGTTAATGCGTCCACAACTGCACATCCAGATGTTGGATGAGTTTGGTGATGCAGCTTTCTTGGAGCTGAAGGAGACC
TATCAGACGAGCTTTGATGCCTATCGCAAAATGCGTAAGCAGGTTTTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
TCGTATTGAGATGTTGGAATTTCAAGTGGCAGAGATTGAGGCTGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAACC
AAGAACGAGATAAACTCCTCAATCACAAAAATATTGCGGATACGCTAACCAATGCCTATAGCATGTTGGACAATGAGGAA
TTCTCCAGTCTTGCTAATGTCCGTTCAGCAATGAATGACATGGAAAGTGTCGAAGAGTATGACCCTGAATACCGTGAAAT
TTCAAGTTCTCTGTCTGAGACCTACTATGTTTTAGAAGATATTACAAAGCGTTTGGAAGATATTATTGAGGACTTGGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGCTTAGACCTTATAAATACTATTACCCGCAAGTACGGTGGGACTGTG
GACGATGTCCTGCTTTATTTTGCCAAGATTACGGATGAGTACAATCTCTTGACTGGAAATAATCTTTCTTCTGAAGACAT
GGAAGCAGAGCTCAAGAAATTGGAAGTTAATCTTGTCGATTTGGCAGGGCAACTTGCATCAGCTCGTCATGATTTGGCCC
TGCAGCTTGAAGCTGAGATTAAGCAAGAACTGCAGGATCTCTATATGGAGAAGGCACAATTTCAGGTTCGCTTTAGTAAG
AGTAAGTTCAGCCGTGAAGGAAATGAAGCAGTTGAATTTTACATTTCCACCAACCCAGGTGAGGACTTTAAGCCTTTGGT
CAAAGTTGCATCTGGTGGGGAATTATCCCGTCTCATGTTGGCTATCAAGTCTGCCTTTTCTCGTAAAGAAGGCAAGACCA
GTATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGCGTGGCCCAAGCCATCGCACAGAAGATTCATAAGATAGGC
CAGCATGGCCAAGTCTTAGCAATCTCTCACTTACCTCAAGTAATTGCGATCGCGGATTATCAATTCTTTATTGAGAAGAT
TAGCGATGAGCATTCTACGGTGTCGACGGTTCGCCTTTTGACTTTAGAAGAGCGAGTAGAGGAAGTAGCTAAAATGTTGG
CTGGGGAAAATGTAACAGAAGCTGCCCTTACTCAAGCCAGAGAATTATTGCAAACGAGGATGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.134

100

0.441

Multiple sequence alignment