Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CR538_RS16415 Genome accession   NZ_CP024141
Coordinates   3109056..3109685 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 14EC029     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3104056..3114685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR538_RS16400 (CR538_16310) helD 3104298..3106352 (-) 2055 WP_000420537.1 DNA helicase IV -
  CR538_RS16405 (CR538_16315) yccF 3106475..3106921 (+) 447 WP_001261235.1 YccF domain-containing protein -
  CR538_RS16410 (CR538_16320) yccS 3106931..3109093 (+) 2163 WP_000875044.1 YccS family putative transporter -
  CR538_RS16415 (CR538_16325) sxy/tfoX 3109056..3109685 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CR538_RS16420 (CR538_16330) sulA 3109904..3110413 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CR538_RS16430 (CR538_16340) ompA 3110770..3111822 (+) 1053 WP_001361736.1 porin OmpA -
  CR538_RS16435 (CR538_16345) matP 3111898..3112350 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CR538_RS16440 (CR538_16350) ycbZ 3112536..3114296 (+) 1761 WP_101968822.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=252514 CR538_RS16415 WP_000839153.1 3109056..3109685(-) (sxy/tfoX) [Escherichia coli strain 14EC029]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=252514 CR538_RS16415 WP_000839153.1 3109056..3109685(-) (sxy/tfoX) [Escherichia coli strain 14EC029]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment