Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DG474_RS00165 Genome accession   NZ_CP029257
Coordinates   29651..30421 (+) Length   256 a.a.
NCBI ID   WP_255778240.1    Uniprot ID   -
Organism   Streptococcus oralis strain CCUG 53468     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 24651..35421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS00140 (DG474_00135) - 25060..25554 (+) 495 WP_002876632.1 carbonic anhydrase -
  DG474_RS00145 (DG474_00140) - 25768..26736 (+) 969 WP_000010175.1 ribose-phosphate diphosphokinase -
  DG474_RS00150 (DG474_00145) - 26857..27294 (+) 438 WP_000076968.1 CoA-binding protein -
  DG474_RS00155 (DG474_00150) - 27323..28333 (-) 1011 WP_076984873.1 YeiH family protein -
  DG474_RS00160 (DG474_00155) - 28485..29654 (+) 1170 WP_200370601.1 pyridoxal phosphate-dependent aminotransferase -
  DG474_RS00165 (DG474_00160) recO 29651..30421 (+) 771 WP_255778240.1 DNA repair protein RecO Machinery gene
  DG474_RS00170 (DG474_00165) plsX 30418..31410 (+) 993 WP_255778241.1 phosphate acyltransferase PlsX -
  DG474_RS00175 (DG474_00170) - 31416..31652 (+) 237 WP_000136435.1 acyl carrier protein -
  DG474_RS00180 (DG474_00175) - 32088..32276 (+) 189 WP_049501355.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  DG474_RS00185 (DG474_00180) - 32294..32461 (+) 168 WP_255778242.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  DG474_RS00190 (DG474_00185) - 32471..32659 (+) 189 WP_000722238.1 hypothetical protein -
  DG474_RS00200 (DG474_00195) comA 33093..35246 (+) 2154 WP_255778243.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29796.23 Da        Isoelectric Point: 5.3692

>NTDB_id=252479 DG474_RS00165 WP_255778240.1 29651..30421(+) (recO) [Streptococcus oralis strain CCUG 53468]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLASVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLRKTLELMEAGIDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAINFETLETISLKAEIKQDLRKFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEDK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=252479 DG474_RS00165 WP_255778240.1 29651..30421(+) (recO) [Streptococcus oralis strain CCUG 53468]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTCTACAATCGTAACTTTCGTGAGGATGACAAGCTAGTCAAGATCTT
TACCGAGCAAGCGGGCAAGCGCATGTTTTTCGTCAAACACGCTGGTCAGTCCAAACTAGCTTCTGTTATTCAGCCCTTGG
TGTTGGCACGATTTCTCTTGCGAATCAATGATGACGGGCTTAGCTACATCGAGGACTACCATGAGGTCATGACCTTTCCA
AAGATTAATAGTGATCTCTTTGTCATGGCCTATGCTACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGATAATCA
GCAGGATGCTCCCTTGTTTGCTTTCTTGAGGAAGACTCTGGAGTTGATGGAAGCAGGGATAGATTATCAGGTTTTAACCA
ATATTTTTGAAATTCAAATCTTGACTCGATTTGGAATCAGCCTTAATTTTAATGAGTGTGTCTTTTGCCATCGGGTCGGT
CAGGCCTTTGACTTTTCTTTCAAATATGGAGCCTGCCTTTGCCCAGAGCATTATCATGAAGATGAGAGACGTTGTCATCT
AAATCCCAATATCCCTTATCTGCTCAATCAATTTCAAGCCATTAATTTTGAAACCTTGGAGACCATTTCGCTTAAGGCAG
AAATCAAGCAAGACTTACGAAAGTTTATGGATCAACTCTACGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAGATAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

95.703

100

0.957