Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CR536_RS17950 Genome accession   NZ_CP024134
Coordinates   3281715..3282344 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 14EC017     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3276715..3287344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR536_RS17935 (CR536_17845) helD 3276957..3279011 (-) 2055 WP_101979746.1 DNA helicase IV -
  CR536_RS17940 (CR536_17850) yccF 3279134..3279580 (+) 447 WP_001261235.1 YccF domain-containing protein -
  CR536_RS17945 (CR536_17855) yccS 3279590..3281752 (+) 2163 WP_000875061.1 YccS family putative transporter -
  CR536_RS17950 (CR536_17860) sxy/tfoX 3281715..3282344 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CR536_RS17955 (CR536_17865) sulA 3282563..3283072 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  CR536_RS17965 (CR536_17875) ompA 3283429..3284481 (+) 1053 WP_001361736.1 porin OmpA -
  CR536_RS17970 (CR536_17880) matP 3284557..3285009 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CR536_RS17975 (CR536_17885) ycbZ 3285195..3286955 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=252470 CR536_RS17950 WP_000839153.1 3281715..3282344(-) (sxy/tfoX) [Escherichia coli strain 14EC017]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=252470 CR536_RS17950 WP_000839153.1 3281715..3282344(-) (sxy/tfoX) [Escherichia coli strain 14EC017]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGATGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment