Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   SAB_RS10930 Genome accession   NC_007622
Coordinates   2150506..2150976 (+) Length   156 a.a.
NCBI ID   WP_000164423.1    Uniprot ID   Q2YUL9
Organism   Staphylococcus aureus RF122     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2145506..2155976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAB_RS10910 (SAB2014) coaW 2145815..2146618 (+) 804 WP_000862722.1 type II pantothenate kinase -
  SAB_RS10915 (SAB2015c) - 2146748..2147419 (-) 672 WP_000120549.1 DUF2750 domain-containing protein -
  SAB_RS10920 (SAB2016c) - 2147818..2149011 (-) 1194 WP_000183727.1 L-aspartate--L-methionine ligase LdmS -
  SAB_RS10925 (SAB2017c) - 2149011..2150195 (-) 1185 WP_001291493.1 M20 family metallopeptidase -
  SAB_RS10930 (SAB2018) luxS 2150506..2150976 (+) 471 WP_000164423.1 S-ribosylhomocysteine lyase Regulator
  SAB_RS10935 (SAB2019c) - 2151128..2151478 (-) 351 WP_001024034.1 DoxX family protein -
  SAB_RS10940 (SAB2020c) - 2151492..2152793 (-) 1302 WP_001242300.1 pyrimidine-nucleoside phosphorylase -
  SAB_RS10950 (SAB2021c) deoC 2153073..2153735 (-) 663 WP_001083339.1 deoxyribose-phosphate aldolase -
  SAB_RS10955 (SAB2022) deoD 2154049..2154759 (+) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  SAB_RS10960 (SAB2023c) - 2154880..2155323 (-) 444 WP_000070864.1 Dps family protein -
  SAB_RS10965 (SAB2024c) - 2155523..2155936 (-) 414 WP_001123297.1 thiol-disulfide oxidoreductase DCC family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17539.79 Da        Isoelectric Point: 5.1853

>NTDB_id=25245 SAB_RS10930 WP_000164423.1 2150506..2150976(+) (luxS) [Staphylococcus aureus RF122]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIYKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=25245 SAB_RS10930 WP_000164423.1 2150506..2150976(+) (luxS) [Staphylococcus aureus RF122]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAAGTGGTTGCTCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTTACAAATATGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCTG
GATTGCATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTCGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YUL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404