Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   C7235_RS18445 Genome accession   NZ_CP029242
Coordinates   3542128..3542733 (-) Length   201 a.a.
NCBI ID   WP_109138263.1    Uniprot ID   -
Organism   Escherichia coli strain ECCRA-119     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3537128..3547733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7235_RS18420 (C7235_18420) aes 3537165..3538124 (+) 960 WP_000801832.1 acetyl esterase -
  C7235_RS18425 (C7235_18425) hemH 3538121..3539083 (-) 963 WP_001250088.1 ferrochelatase -
  C7235_RS18430 (C7235_18430) adk 3539319..3539963 (-) 645 WP_001220233.1 adenylate kinase -
  C7235_RS18440 (C7235_18440) htpG 3540144..3542018 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  C7235_RS18445 (C7235_18445) recR 3542128..3542733 (-) 606 WP_109138263.1 recombination mediator RecR Machinery gene
  C7235_RS18450 (C7235_18450) ybaB 3542733..3543062 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  C7235_RS18455 (C7235_18455) dnaX 3543115..3545046 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  C7235_RS18460 (C7235_18460) apt 3545175..3545726 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  C7235_RS18470 (C7235_18470) ybaN 3545879..3546256 (-) 378 WP_001188905.1 DUF454 family protein -
  C7235_RS18475 (C7235_18475) priC 3546326..3546853 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  C7235_RS18480 (C7235_18480) rsmS 3546867..3547028 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  C7235_RS28465 - 3547081..3547179 (-) 99 Protein_3395 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21993.03 Da        Isoelectric Point: 4.9097

>NTDB_id=252449 C7235_RS18445 WP_109138263.1 3542128..3542733(-) (recR) [Escherichia coli strain ECCRA-119]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGISPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=252449 C7235_RS18445 WP_109138263.1 3542128..3542733(-) (recR) [Escherichia coli strain ECCRA-119]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCAGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

99.005

0.443
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.005

0.438