Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | CR542_RS10300 | Genome accession | NZ_CP024126 |
| Coordinates | 2005808..2008261 (-) | Length | 817 a.a. |
| NCBI ID | WP_009910884.1 | Uniprot ID | A0A7Y6RRF0 |
| Organism | Streptococcus suis strain HA0609 | ||
| Function | degradation of ComW (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2000036..2033897 | 2005808..2008261 | within | 0 |
Gene organization within MGE regions
Location: 2000036..2033897
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CR542_RS10280 (CR542_10240) | - | 2000036..2003155 (+) | 3120 | WP_013730588.1 | DUF6359 domain-containing protein | - |
| CR542_RS10285 (CR542_10245) | hslO | 2003235..2004101 (+) | 867 | WP_013730589.1 | Hsp33 family molecular chaperone HslO | - |
| CR542_RS10290 (CR542_10250) | dusB | 2004094..2005098 (+) | 1005 | WP_009910879.1 | tRNA dihydrouridine synthase DusB | - |
| CR542_RS10295 (CR542_10255) | - | 2005199..2005690 (-) | 492 | WP_009910880.1 | adenylyltransferase/cytidyltransferase family protein | - |
| CR542_RS10300 (CR542_10260) | clpC | 2005808..2008261 (-) | 2454 | WP_009910884.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| CR542_RS10305 (CR542_10265) | - | 2008265..2008717 (-) | 453 | WP_013730590.1 | CtsR family transcriptional regulator | - |
| CR542_RS10310 (CR542_10270) | - | 2008885..2009244 (+) | 360 | WP_013730591.1 | bacteriocin transporter | - |
| CR542_RS10315 (CR542_10275) | - | 2009316..2011184 (-) | 1869 | WP_013730592.1 | Ig-like domain-containing protein | - |
| CR542_RS10320 (CR542_10280) | - | 2011729..2012931 (+) | 1203 | WP_009909264.1 | IS110-like element ISSsu7 family transposase | - |
| CR542_RS10325 (CR542_10285) | recF | 2013371..2014465 (-) | 1095 | WP_002936177.1 | DNA replication/repair protein RecF | - |
| CR542_RS10330 (CR542_10290) | yaaA | 2014468..2014851 (-) | 384 | WP_002936175.1 | S4 domain-containing protein YaaA | - |
| CR542_RS10335 (CR542_10295) | - | 2014989..2016161 (-) | 1173 | WP_013730693.1 | tyrosine-type recombinase/integrase | - |
| CR542_RS10340 (CR542_10300) | - | 2016326..2017156 (-) | 831 | WP_013730692.1 | KilA-N domain-containing protein | - |
| CR542_RS10345 (CR542_10305) | - | 2017520..2018233 (-) | 714 | WP_013730691.1 | helix-turn-helix domain-containing protein | - |
| CR542_RS10350 (CR542_10310) | - | 2018387..2018614 (+) | 228 | WP_013730690.1 | helix-turn-helix domain-containing protein | - |
| CR542_RS10355 (CR542_10315) | - | 2018633..2019379 (+) | 747 | WP_013730689.1 | Bro-N domain-containing protein | - |
| CR542_RS10360 (CR542_10320) | - | 2019392..2020018 (+) | 627 | WP_013730688.1 | Rha family transcriptional regulator | - |
| CR542_RS10365 (CR542_10325) | - | 2020457..2020846 (+) | 390 | WP_013730687.1 | hypothetical protein | - |
| CR542_RS10370 (CR542_10330) | - | 2020834..2021037 (+) | 204 | WP_013730686.1 | hypothetical protein | - |
| CR542_RS11680 | - | 2021049..2021198 (+) | 150 | WP_013730685.1 | hypothetical protein | - |
| CR542_RS10375 (CR542_10335) | - | 2021195..2021533 (+) | 339 | WP_024409270.1 | hypothetical protein | - |
| CR542_RS10380 (CR542_10340) | - | 2021523..2021807 (+) | 285 | WP_013730683.1 | hypothetical protein | - |
| CR542_RS10385 (CR542_10345) | - | 2021794..2022609 (+) | 816 | WP_013730682.1 | DnaD domain protein | - |
| CR542_RS10390 (CR542_10350) | - | 2022622..2023080 (+) | 459 | WP_013730681.1 | hypothetical protein | - |
| CR542_RS10395 (CR542_10355) | - | 2023158..2023706 (+) | 549 | WP_013730680.1 | hypothetical protein | - |
| CR542_RS11900 | - | 2023756..2023959 (+) | 204 | WP_226314306.1 | hypothetical protein | - |
| CR542_RS11905 | - | 2023995..2024147 (+) | 153 | WP_226314305.1 | hypothetical protein | - |
| CR542_RS10405 (CR542_10365) | - | 2024485..2025687 (+) | 1203 | WP_009909264.1 | IS110-like element ISSsu7 family transposase | - |
| CR542_RS10410 (CR542_10370) | - | 2025993..2026334 (+) | 342 | WP_024381289.1 | DUF1492 domain-containing protein | - |
| CR542_RS10415 (CR542_10375) | yfmF | 2026752..2028005 (+) | 1254 | WP_099425958.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| CR542_RS10420 (CR542_10380) | yfmH | 2028002..2029285 (+) | 1284 | WP_002939071.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| CR542_RS10425 (CR542_10385) | rodZ | 2029367..2030224 (+) | 858 | WP_002939074.1 | cytoskeleton protein RodZ | - |
| CR542_RS10430 (CR542_10390) | pgsA | 2030234..2030773 (+) | 540 | WP_013730677.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CR542_RS10435 (CR542_10395) | - | 2030770..2031606 (+) | 837 | WP_099425959.1 | energy-coupling factor ABC transporter ATP-binding protein | - |
| CR542_RS10440 (CR542_10400) | - | 2031582..2032424 (+) | 843 | WP_009911039.1 | energy-coupling factor transporter ATPase | - |
| CR542_RS10445 (CR542_10405) | - | 2032417..2033211 (+) | 795 | WP_002938197.1 | energy-coupling factor transporter transmembrane component T family protein | - |
| CR542_RS10450 (CR542_10410) | - | 2033343..2033897 (+) | 555 | WP_009911037.1 | LysM peptidoglycan-binding domain-containing protein | - |
Sequence
Protein
Download Length: 817 a.a. Molecular weight: 90461.93 Da Isoelectric Point: 6.0456
>NTDB_id=252408 CR542_RS10300 WP_009910884.1 2005808..2008261(-) (clpC) [Streptococcus suis strain HA0609]
MKISTGLQRVFEDAQLVAQRYACDYLETWHVLLSFVINHDTVAGAVLAEYPISISDYEHATFVVTDKVYREELDSFRILP
SSKRLDETASFAKKIAEVVKAKELGTEHLFMAMLLDKRSTASQILDKVGFCFEDSDDKFRFLDLRKNLEARAGFTKEDLK
AIRSVMKGGKAKPTNMGQMMGMPPAPQSGGLEDYTRDLTALAREGKIEPVIGRDAEIARMIQILSRKTKNNPVLVGDAGV
GKTALALGLAQRVAAGDVPVSLAKMRVLELDLMNVIAGTRFRGDFEERMNNIINDIEEDGQVILFIDELHTIMGSGSGID
STLDAANILKPALARGTLRTVGATTQTEYQKHIEKDAALVRRFAKVTIEEPTVEDSIAILTGLKGTFEKYHRVRIGQAAV
ETAVTYAKRYLTSKNLPDSAIDLLDEASATVQNRVKGQGEETGLTSIDKALMDKKYKTVSKLLIETKEDAEASQNYDLEV
TEEDVLETLSRLSGIPVAKLSQSDTKKYLNLEAELHKRVIGQEEAISAVSRAIRRNQSGIRTGRRPIGSFMFLGPTGVGK
TELAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLL
QVLDDGVLTDSKGRKVDFSNTIIIMTSNLGATALRDDKTVGFGALDLSKDHKEVEKRIFEELKKAYRPEFINRIDEKVVF
HSLTETHMQDVVKVMIKPLLAVTAEKGITLKLQPSALKLLAKQGYDPEMGARPLRRLLQTKLEDPLAEMLLRGDLTTSST
LKVGVKGEELKFDVVKG
MKISTGLQRVFEDAQLVAQRYACDYLETWHVLLSFVINHDTVAGAVLAEYPISISDYEHATFVVTDKVYREELDSFRILP
SSKRLDETASFAKKIAEVVKAKELGTEHLFMAMLLDKRSTASQILDKVGFCFEDSDDKFRFLDLRKNLEARAGFTKEDLK
AIRSVMKGGKAKPTNMGQMMGMPPAPQSGGLEDYTRDLTALAREGKIEPVIGRDAEIARMIQILSRKTKNNPVLVGDAGV
GKTALALGLAQRVAAGDVPVSLAKMRVLELDLMNVIAGTRFRGDFEERMNNIINDIEEDGQVILFIDELHTIMGSGSGID
STLDAANILKPALARGTLRTVGATTQTEYQKHIEKDAALVRRFAKVTIEEPTVEDSIAILTGLKGTFEKYHRVRIGQAAV
ETAVTYAKRYLTSKNLPDSAIDLLDEASATVQNRVKGQGEETGLTSIDKALMDKKYKTVSKLLIETKEDAEASQNYDLEV
TEEDVLETLSRLSGIPVAKLSQSDTKKYLNLEAELHKRVIGQEEAISAVSRAIRRNQSGIRTGRRPIGSFMFLGPTGVGK
TELAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLL
QVLDDGVLTDSKGRKVDFSNTIIIMTSNLGATALRDDKTVGFGALDLSKDHKEVEKRIFEELKKAYRPEFINRIDEKVVF
HSLTETHMQDVVKVMIKPLLAVTAEKGITLKLQPSALKLLAKQGYDPEMGARPLRRLLQTKLEDPLAEMLLRGDLTTSST
LKVGVKGEELKFDVVKG
Nucleotide
Download Length: 2454 bp
>NTDB_id=252408 CR542_RS10300 WP_009910884.1 2005808..2008261(-) (clpC) [Streptococcus suis strain HA0609]
ATGAAAATTTCAACTGGTTTACAGCGGGTTTTTGAAGATGCCCAGTTAGTGGCTCAACGTTATGCCTGTGATTACTTGGA
AACCTGGCATGTTCTCTTGTCTTTCGTTATCAACCATGATACAGTCGCTGGCGCTGTTTTGGCAGAATATCCTATTTCAA
TTTCTGACTATGAACATGCAACTTTTGTTGTGACCGACAAGGTCTATCGTGAAGAGTTGGATAGTTTTCGTATTTTACCA
TCTTCTAAACGTTTGGATGAAACGGCTAGTTTTGCCAAGAAAATTGCAGAAGTCGTCAAGGCTAAGGAGCTGGGAACGGA
ACATTTGTTTATGGCTATGTTGTTGGACAAGCGGTCAACAGCTAGTCAGATTTTGGACAAGGTAGGTTTTTGTTTTGAAG
ACTCAGATGATAAGTTTCGTTTCTTGGATTTGCGTAAAAACTTGGAGGCACGTGCGGGATTTACCAAAGAGGACCTTAAA
GCTATCCGCAGTGTGATGAAGGGTGGCAAAGCCAAACCTACTAATATGGGACAGATGATGGGAATGCCCCCAGCACCTCA
AAGTGGTGGATTAGAAGACTACACTCGTGATTTGACAGCTTTGGCGCGTGAAGGGAAGATTGAACCTGTCATCGGTCGAG
ACGCTGAGATTGCACGGATGATCCAAATTCTATCACGTAAAACCAAGAATAACCCAGTTCTAGTTGGTGATGCTGGTGTC
GGAAAAACTGCGCTTGCTTTGGGTCTTGCTCAACGTGTTGCTGCAGGTGATGTCCCTGTCAGCTTGGCTAAGATGCGGGT
TTTGGAACTTGACTTGATGAACGTTATCGCTGGAACTCGTTTCCGTGGTGATTTCGAAGAGCGGATGAATAATATCATCA
ACGACATCGAGGAAGATGGTCAGGTCATCCTTTTCATCGATGAGTTGCATACCATTATGGGTTCTGGCTCAGGGATTGAT
TCGACCTTGGATGCAGCCAATATCCTCAAACCAGCTCTTGCTCGGGGCACCCTCCGTACGGTCGGAGCGACGACTCAGAC
AGAGTACCAAAAGCATATTGAGAAAGACGCAGCCCTGGTTCGTCGTTTTGCCAAAGTGACCATTGAAGAGCCGACAGTGG
AAGATAGCATTGCCATTTTGACTGGTTTAAAAGGTACTTTTGAAAAATACCACAGGGTCCGTATTGGACAAGCAGCTGTA
GAGACTGCTGTGACCTACGCTAAGCGGTATTTGACCAGTAAAAACCTGCCAGATTCTGCCATTGACTTGCTGGATGAAGC
CAGTGCAACGGTACAAAATCGAGTGAAAGGGCAGGGTGAGGAAACAGGACTGACGAGCATAGACAAGGCCTTGATGGATA
AAAAATATAAGACTGTCAGCAAGCTTTTGATTGAAACGAAAGAAGATGCCGAGGCTAGTCAAAACTATGACCTTGAAGTA
ACAGAAGAAGATGTTTTAGAAACACTTAGCCGCTTGTCAGGTATCCCAGTAGCCAAGCTTAGCCAATCAGATACTAAGAA
GTATCTGAATCTGGAAGCAGAATTGCACAAGCGTGTGATTGGGCAGGAAGAAGCTATTTCTGCAGTTAGCAGAGCTATTC
GCCGTAATCAGTCAGGGATTCGTACAGGTCGCAGACCGATTGGTTCCTTTATGTTCTTGGGACCAACTGGTGTCGGTAAG
ACAGAGCTTGCTAAAGCCTTGGCAGAGGTTCTCTTTGATGATGAATCTGCTCTTATCCGTTTTGATATGTCCGAGTATAT
GGAGAAATTTGCGGCCAGCCGTCTCAATGGAGCGCCTCCAGGTTACGTGGGCTATGAAGAAGGTGGCGAATTGACAGAAA
AAGTTCGTAACAAACCTTATTCTGTTCTTCTTTTTGATGAGGTTGAAAAGGCTCATCCAGATATTTTCAATGTTCTCTTG
CAGGTCTTGGATGATGGTGTTCTGACGGACAGTAAGGGACGTAAGGTTGATTTCTCAAATACTATTATTATCATGACGTC
AAACCTTGGAGCAACAGCTCTTCGTGATGATAAGACAGTTGGTTTTGGTGCCCTTGATTTATCTAAGGACCACAAGGAAG
TGGAGAAACGCATTTTTGAGGAATTGAAAAAAGCCTATCGTCCAGAATTTATCAACCGTATTGACGAGAAAGTTGTCTTC
CATAGCCTAACGGAAACTCATATGCAGGATGTTGTCAAGGTCATGATTAAACCTTTGTTGGCTGTAACAGCTGAGAAAGG
AATTACTCTTAAACTGCAACCGTCAGCCCTTAAGTTATTGGCTAAACAAGGTTATGACCCAGAAATGGGGGCTCGTCCGC
TACGTAGGCTCTTACAAACCAAATTGGAAGATCCGTTGGCAGAAATGTTACTCCGTGGTGACTTGACTACTAGTTCGACC
TTGAAGGTTGGGGTCAAGGGTGAAGAGCTCAAGTTTGATGTGGTAAAGGGATAA
ATGAAAATTTCAACTGGTTTACAGCGGGTTTTTGAAGATGCCCAGTTAGTGGCTCAACGTTATGCCTGTGATTACTTGGA
AACCTGGCATGTTCTCTTGTCTTTCGTTATCAACCATGATACAGTCGCTGGCGCTGTTTTGGCAGAATATCCTATTTCAA
TTTCTGACTATGAACATGCAACTTTTGTTGTGACCGACAAGGTCTATCGTGAAGAGTTGGATAGTTTTCGTATTTTACCA
TCTTCTAAACGTTTGGATGAAACGGCTAGTTTTGCCAAGAAAATTGCAGAAGTCGTCAAGGCTAAGGAGCTGGGAACGGA
ACATTTGTTTATGGCTATGTTGTTGGACAAGCGGTCAACAGCTAGTCAGATTTTGGACAAGGTAGGTTTTTGTTTTGAAG
ACTCAGATGATAAGTTTCGTTTCTTGGATTTGCGTAAAAACTTGGAGGCACGTGCGGGATTTACCAAAGAGGACCTTAAA
GCTATCCGCAGTGTGATGAAGGGTGGCAAAGCCAAACCTACTAATATGGGACAGATGATGGGAATGCCCCCAGCACCTCA
AAGTGGTGGATTAGAAGACTACACTCGTGATTTGACAGCTTTGGCGCGTGAAGGGAAGATTGAACCTGTCATCGGTCGAG
ACGCTGAGATTGCACGGATGATCCAAATTCTATCACGTAAAACCAAGAATAACCCAGTTCTAGTTGGTGATGCTGGTGTC
GGAAAAACTGCGCTTGCTTTGGGTCTTGCTCAACGTGTTGCTGCAGGTGATGTCCCTGTCAGCTTGGCTAAGATGCGGGT
TTTGGAACTTGACTTGATGAACGTTATCGCTGGAACTCGTTTCCGTGGTGATTTCGAAGAGCGGATGAATAATATCATCA
ACGACATCGAGGAAGATGGTCAGGTCATCCTTTTCATCGATGAGTTGCATACCATTATGGGTTCTGGCTCAGGGATTGAT
TCGACCTTGGATGCAGCCAATATCCTCAAACCAGCTCTTGCTCGGGGCACCCTCCGTACGGTCGGAGCGACGACTCAGAC
AGAGTACCAAAAGCATATTGAGAAAGACGCAGCCCTGGTTCGTCGTTTTGCCAAAGTGACCATTGAAGAGCCGACAGTGG
AAGATAGCATTGCCATTTTGACTGGTTTAAAAGGTACTTTTGAAAAATACCACAGGGTCCGTATTGGACAAGCAGCTGTA
GAGACTGCTGTGACCTACGCTAAGCGGTATTTGACCAGTAAAAACCTGCCAGATTCTGCCATTGACTTGCTGGATGAAGC
CAGTGCAACGGTACAAAATCGAGTGAAAGGGCAGGGTGAGGAAACAGGACTGACGAGCATAGACAAGGCCTTGATGGATA
AAAAATATAAGACTGTCAGCAAGCTTTTGATTGAAACGAAAGAAGATGCCGAGGCTAGTCAAAACTATGACCTTGAAGTA
ACAGAAGAAGATGTTTTAGAAACACTTAGCCGCTTGTCAGGTATCCCAGTAGCCAAGCTTAGCCAATCAGATACTAAGAA
GTATCTGAATCTGGAAGCAGAATTGCACAAGCGTGTGATTGGGCAGGAAGAAGCTATTTCTGCAGTTAGCAGAGCTATTC
GCCGTAATCAGTCAGGGATTCGTACAGGTCGCAGACCGATTGGTTCCTTTATGTTCTTGGGACCAACTGGTGTCGGTAAG
ACAGAGCTTGCTAAAGCCTTGGCAGAGGTTCTCTTTGATGATGAATCTGCTCTTATCCGTTTTGATATGTCCGAGTATAT
GGAGAAATTTGCGGCCAGCCGTCTCAATGGAGCGCCTCCAGGTTACGTGGGCTATGAAGAAGGTGGCGAATTGACAGAAA
AAGTTCGTAACAAACCTTATTCTGTTCTTCTTTTTGATGAGGTTGAAAAGGCTCATCCAGATATTTTCAATGTTCTCTTG
CAGGTCTTGGATGATGGTGTTCTGACGGACAGTAAGGGACGTAAGGTTGATTTCTCAAATACTATTATTATCATGACGTC
AAACCTTGGAGCAACAGCTCTTCGTGATGATAAGACAGTTGGTTTTGGTGCCCTTGATTTATCTAAGGACCACAAGGAAG
TGGAGAAACGCATTTTTGAGGAATTGAAAAAAGCCTATCGTCCAGAATTTATCAACCGTATTGACGAGAAAGTTGTCTTC
CATAGCCTAACGGAAACTCATATGCAGGATGTTGTCAAGGTCATGATTAAACCTTTGTTGGCTGTAACAGCTGAGAAAGG
AATTACTCTTAAACTGCAACCGTCAGCCCTTAAGTTATTGGCTAAACAAGGTTATGACCCAGAAATGGGGGCTCGTCCGC
TACGTAGGCTCTTACAAACCAAATTGGAAGATCCGTTGGCAGAAATGTTACTCCGTGGTGACTTGACTACTAGTTCGACC
TTGAAGGTTGGGGTCAAGGGTGAAGAGCTCAAGTTTGATGTGGTAAAGGGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Streptococcus pneumoniae TIGR4 |
71.902 |
99.755 |
0.717 |
| clpC | Streptococcus pneumoniae Rx1 |
71.902 |
99.755 |
0.717 |
| clpC | Streptococcus pneumoniae D39 |
71.902 |
99.755 |
0.717 |
| clpC | Streptococcus mutans UA159 |
66.339 |
99.633 |
0.661 |
| clpC | Streptococcus thermophilus LMD-9 |
64.14 |
100 |
0.652 |
| clpC | Streptococcus thermophilus LMG 18311 |
64.14 |
100 |
0.652 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
48.982 |
100 |
0.501 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
43.349 |
100 |
0.447 |