Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SRU_RS13105 Genome accession   NC_007677
Coordinates   3105642..3107021 (-) Length   459 a.a.
NCBI ID   WP_011405212.1    Uniprot ID   A0A9X2Q849
Organism   Salinibacter ruber DSM 13855     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3100642..3112021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRU_RS13075 (SRU_2495) - 3100999..3101397 (+) 399 WP_011405207.1 RidA family protein -
  SRU_RS13080 (SRU_2496) - 3101414..3101968 (-) 555 WP_164923653.1 hypothetical protein -
  SRU_RS13085 (SRU_2497) - 3102053..3103339 (-) 1287 WP_011405209.1 N-acetylmuramoyl-L-alanine amidase family protein -
  SRU_RS13090 - 3103489..3104232 (-) 744 WP_164923654.1 hypothetical protein -
  SRU_RS13095 - 3104283..3104846 (-) 564 WP_164923655.1 hypothetical protein -
  SRU_RS13100 (SRU_2499) - 3104895..3105500 (-) 606 WP_013062684.1 RNA polymerase sigma factor -
  SRU_RS13105 (SRU_2500) radA 3105642..3107021 (-) 1380 WP_011405212.1 DNA repair protein RadA Machinery gene
  SRU_RS13110 (SRU_2501) - 3107258..3108010 (+) 753 WP_011405213.1 MlaE family ABC transporter permease -
  SRU_RS13115 (SRU_2502) - 3108077..3108847 (+) 771 WP_011405214.1 ABC transporter ATP-binding protein -
  SRU_RS13120 (SRU_2503) - 3108905..3109837 (+) 933 WP_013062687.1 MlaD family protein -
  SRU_RS13125 (SRU_2504) - 3109886..3111094 (+) 1209 WP_011405216.1 DUF445 domain-containing protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49326.77 Da        Isoelectric Point: 4.5854

>NTDB_id=25237 SRU_RS13105 WP_011405212.1 3105642..3107021(-) (radA) [Salinibacter ruber DSM 13855]
MASSEPRYVCQECGHEAHKWMGKCTGCGAWNTLVKETESADVEAQVPDLSTDGQNGTAAAQNQPTQLTEVEMEGESRLKT
GVDELDRVMGGGIMQGSFSLIAGDPGIGKSTLMTELGGYLPGRKILYVTGEESKRQVKLRAQRLGVDSDALYLLAETNVQ
EIANAVDDVAPDLLVADSIQTIYRPDLTSAPGSVSQVRESTASLLKLTKEREFSTFLVGHVTKKGTIAGPRVLEHMVDTV
LYFEGDQNHAYRILRSVKNRFGAANEIGVFEMREDGLREVPNPSEIFLSERGYGVSGSTVVCSLEGTRPILVEIQALVTP
TSYSTPQRTVTGFAAQRLQMILAVLEKRAGLAFSDHDVFINVAGGVKLEEPAVDLGVAIAAASSFRDIPADTGSALIGEV
GLGGEIRTVSRVEPRLKEAAKLGFDRAVVPENNLDRIAGDYDIDVTGAQQLKEVVDVVL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=25237 SRU_RS13105 WP_011405212.1 3105642..3107021(-) (radA) [Salinibacter ruber DSM 13855]
ATGGCCAGCTCCGAGCCGCGATACGTTTGTCAGGAATGTGGGCACGAGGCCCACAAGTGGATGGGCAAGTGCACCGGGTG
CGGGGCCTGGAACACGCTCGTAAAGGAGACCGAGAGTGCCGACGTGGAGGCCCAGGTCCCCGACCTCAGCACGGACGGCC
AGAACGGAACGGCGGCGGCCCAAAACCAGCCGACCCAGCTGACGGAGGTGGAGATGGAGGGGGAGTCTCGGCTGAAGACC
GGGGTCGACGAGCTCGACCGCGTCATGGGCGGGGGCATCATGCAGGGCTCGTTCAGCCTCATCGCCGGGGACCCCGGCAT
CGGCAAGAGCACGCTCATGACCGAGCTGGGCGGCTACCTGCCGGGCCGCAAGATCCTGTACGTGACCGGGGAGGAGTCGA
AGCGACAGGTCAAGCTGCGCGCCCAGCGGCTCGGGGTCGACAGCGACGCCCTCTACCTGCTGGCCGAGACGAACGTGCAG
GAGATCGCCAACGCCGTCGACGACGTGGCCCCCGACCTGCTCGTGGCCGACTCCATTCAGACCATCTACCGTCCCGACCT
GACGAGCGCCCCCGGTTCGGTCAGTCAGGTGCGGGAGAGCACCGCCTCGCTCCTCAAGCTCACGAAGGAGCGGGAGTTCT
CCACCTTCCTCGTGGGGCACGTTACCAAGAAGGGCACCATCGCGGGGCCCCGGGTGCTGGAGCATATGGTGGACACGGTG
TTGTACTTTGAGGGCGATCAGAACCACGCGTACCGCATCCTCCGGAGTGTGAAAAACCGGTTCGGAGCGGCCAACGAGAT
TGGGGTGTTCGAGATGCGGGAGGACGGCCTGCGGGAGGTGCCCAACCCGAGTGAGATCTTCCTGTCCGAGCGCGGCTACG
GCGTGAGCGGCTCCACGGTCGTGTGCTCCCTGGAGGGCACCCGGCCCATCCTGGTCGAGATTCAGGCGCTCGTCACGCCC
ACCTCCTACAGCACCCCCCAGCGCACCGTCACCGGCTTCGCGGCCCAGCGGCTGCAGATGATACTGGCGGTGTTGGAGAA
GCGCGCCGGACTGGCCTTCAGCGACCATGACGTGTTCATCAACGTGGCCGGGGGGGTCAAACTGGAGGAGCCGGCCGTGG
ACCTGGGCGTCGCCATCGCGGCGGCGTCGTCGTTCCGCGACATTCCCGCCGACACCGGCTCGGCCCTCATCGGCGAGGTG
GGGCTCGGCGGCGAGATTCGCACCGTGAGCCGCGTGGAGCCGCGCCTCAAGGAGGCCGCCAAGCTGGGCTTCGACCGGGC
GGTGGTGCCGGAGAACAACCTCGACCGCATTGCGGGCGACTACGACATCGACGTGACCGGGGCCCAGCAACTGAAGGAGG
TCGTGGACGTGGTGTTGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)

KaiC (ATPase)

(79-151)

Subunit ChlI of Mg-chelatase (ChlI)

(344-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.495

100

0.527
  radA Streptococcus mitis NCTC 12261

50.435

100

0.505
  radA Streptococcus mitis SK321

50.435

100

0.505
  radA Streptococcus pneumoniae Rx1

50.435

100

0.505
  radA Streptococcus pneumoniae D39

50.435

100

0.505
  radA Streptococcus pneumoniae R6

50.435

100

0.505
  radA Streptococcus pneumoniae TIGR4

50.435

100

0.505

Multiple sequence alignment