Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DEH18_RS00020 Genome accession   NZ_CP029241
Coordinates   5384..6499 (+) Length   371 a.a.
NCBI ID   WP_030886024.1    Uniprot ID   A0A4Y3QZ95
Organism   Streptomyces sp. NHF165     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 384..11499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH18_RS00010 (DEH18_00015) dnaN 3144..4274 (+) 1131 WP_030886019.1 DNA polymerase III subunit beta -
  DEH18_RS00015 (DEH18_00020) gnd 4430..5308 (+) 879 WP_030887960.1 decarboxylating 6-phosphogluconate dehydrogenase -
  DEH18_RS00020 (DEH18_00025) recF 5384..6499 (+) 1116 WP_030886024.1 DNA replication/repair protein RecF Machinery gene
  DEH18_RS00025 (DEH18_00030) - 6574..7080 (+) 507 WP_037849606.1 DciA family protein -
  DEH18_RS00030 (DEH18_00035) gyrB 7392..9509 (+) 2118 WP_030886029.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40107.67 Da        Isoelectric Point: 6.9323

>NTDB_id=252334 DEH18_RS00020 WP_030886024.1 5384..6499(+) (recF) [Streptomyces sp. NHF165]
MHVSHLSLADFRSYARAEVPLGPGVTAFLGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRSGAQRAIVRAQVRQGDRQ
QLVELELNPGRANRARINRSSQVRPRDVLGIVRSVLFAPEDLALVKGDPGERRRFVDELVVARAPRMAGVRSDYERVLKQ
RNSLLKSAAMARRHGGRGVDLSTLDVWDQHLARVGAELLAQRLDLLAVLEPLADKAYEQLAPGGGPLALEYRGPVTGASP
EELYTGLLGALGEARKQEIERGVTLVGPHRDDVLLRLGELPAKGYASHGESWSYALALRLAAYELLGSEGHEPVLVLDDV
FAELDVRRRERLAELVAPAEQVLVTAAVEEDVPAALSGARFVVGDGEVAQR

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=252334 DEH18_RS00020 WP_030886024.1 5384..6499(+) (recF) [Streptomyces sp. NHF165]
GTGCATGTGTCCCATCTCTCGCTGGCCGACTTCCGGTCGTACGCCCGGGCCGAGGTGCCGCTCGGCCCGGGCGTCACCGC
GTTCCTCGGGCCCAACGGCCAGGGCAAGACGAACCTGGTGGAGGCCGTCGGCTACTTGGCGACGCTGGGCAGTCACCGGG
TGTCGTCGGATGCCCCGTTGGTACGCAGCGGTGCCCAGCGCGCGATCGTGCGGGCGCAGGTGCGGCAGGGCGACCGGCAG
CAGCTCGTCGAGCTGGAGCTGAACCCGGGCCGGGCGAACCGGGCGCGGATCAACCGTTCTTCGCAGGTGAGGCCGCGCGA
TGTGCTCGGCATCGTGCGCAGTGTGCTGTTCGCGCCGGAGGATCTGGCGCTGGTGAAGGGCGATCCGGGTGAGCGGCGCC
GGTTCGTGGACGAGCTGGTGGTGGCGCGCGCGCCGCGGATGGCGGGGGTCCGCTCGGACTACGAGCGGGTGCTCAAGCAG
CGCAACTCGCTGCTGAAGTCGGCGGCGATGGCCCGTCGGCACGGCGGCCGGGGGGTCGATCTGTCCACGCTGGACGTGTG
GGACCAGCATCTGGCCCGGGTGGGTGCCGAGTTGCTGGCGCAGCGGCTCGATCTGCTGGCGGTGCTGGAGCCGTTGGCGG
ACAAGGCGTACGAGCAGTTGGCGCCGGGCGGCGGCCCGCTGGCCCTGGAGTACCGCGGCCCGGTGACGGGTGCGTCACCG
GAGGAGCTGTACACCGGGCTGCTGGGGGCGCTCGGTGAGGCGCGCAAGCAGGAGATCGAGCGCGGGGTGACGCTGGTGGG
CCCGCACCGTGACGATGTGCTGCTCAGGCTGGGCGAGTTGCCCGCGAAGGGGTACGCGAGCCACGGCGAGTCGTGGTCGT
ATGCGCTGGCGCTGCGGCTGGCGGCCTATGAGCTGCTGGGCAGCGAGGGGCACGAGCCGGTGCTGGTGCTCGACGACGTC
TTCGCCGAGCTGGATGTGCGGCGCCGCGAGCGGCTGGCGGAACTGGTGGCTCCGGCCGAGCAGGTGCTGGTGACGGCCGC
CGTGGAGGAGGACGTGCCGGCGGCGCTGTCCGGTGCGCGGTTCGTCGTCGGCGACGGGGAGGTCGCGCAGCGGTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y3QZ95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.031

94.609

0.369