Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   SAB_RS08480 Genome accession   NC_007622
Coordinates   1717507..1718781 (+) Length   424 a.a.
NCBI ID   WP_001279343.1    Uniprot ID   -
Organism   Staphylococcus aureus RF122     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1712507..1723781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAB_RS08460 - 1713831..1713926 (+) 96 WP_031901344.1 hypothetical protein -
  SAB_RS08465 (SAB1583c) - 1713887..1715017 (-) 1131 WP_000721730.1 HAD family hydrolase -
  SAB_RS08470 (SAB1584c) nagE 1715124..1716590 (-) 1467 WP_000276357.1 N-acetylglucosamine-specific PTS transporter subunit IIBC -
  SAB_RS08475 (SAB1585c) - 1716718..1717335 (-) 618 WP_000287588.1 lysophospholipid acyltransferase family protein -
  SAB_RS08480 (SAB1586) htrA 1717507..1718781 (+) 1275 WP_001279343.1 S1C family serine protease Regulator
  SAB_RS08485 (SAB1587c) tyrS 1718875..1720137 (-) 1263 WP_000186029.1 tyrosine--tRNA ligase -
  SAB_RS08490 (SAB1588) - 1720518..1721423 (+) 906 WP_000184373.1 transglycosylase domain-containing protein -
  SAB_RS08495 - 1721403..1721489 (-) 87 WP_042852898.1 hypothetical protein -
  SAB_RS15220 - 1721494..1721556 (+) 63 Protein_1652 hypothetical protein -
  SAB_RS08500 (SAB1589c) - 1721534..1722850 (-) 1317 WP_001066884.1 ISL3-like element ISSau8 family transposase -

Sequence


Protein


Download         Length: 424 a.a.        Molecular weight: 45763.90 Da        Isoelectric Point: 9.8964

>NTDB_id=25231 SAB_RS08480 WP_001279343.1 1717507..1718781(+) (htrA) [Staphylococcus aureus RF122]
MSDFNHTDHSTTNHSQTPRYRRPKFPWFKTVIVALIAGIIGALLVLGIGKVLNSTILNKDGSTVQTTNNKGGNQLDGQSK
KFGTVHEMIKSVSPTIVGVINMQKASSVDDLLKGKSSKPSEAGVGSGVIYQINNNSAYIVTNNHVIDGANEIRVQLHNKK
QVKAKLVGKDAVTDIAVLKIENTKGIKAIQFANSSKVQTGDSVFAMGNPLGLQFANSVTSGIISASERTIDTETTGGNTK
VSVLQTDAAINPGNSGGALVDINGNLVGINSMKIAATQVEGIGFAIPSNEVKVTIEQLVKHGKIDRPSIGIGLINLKDIP
EEEREQLHTDSEDGIYVAKADSDIDLKKGDIITEIDGKKIKDDVDLRSYLYENKKPGESVTVTVIRDGKTKEVKVKLKQQ
KEQPKRQSRSERQSPGQGDRDFFR

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=25231 SAB_RS08480 WP_001279343.1 1717507..1718781(+) (htrA) [Staphylococcus aureus RF122]
ATGTCAGATTTTAATCATACAGATCATTCTACAACAAACCATAGCCAAACACCTAGATACAGAAGACCTAAATTTCCATG
GTTTAAAACAGTCATCGTTGCATTGATTGCTGGAATCATTGGTGCACTTCTAGTACTTGGTATAGGCAAAGTATTAAATA
GTACAATTTTAAATAAAGATGGTTCAACTGTCCAGACAACAAATAATAAAGGTGGCAATCAATTAGACGGTCAAAGCAAG
AAATTCGGTACCGTTCATGAAATGATAAAATCTGTCTCCCCTACAATTGTTGGAGTTATTAACATGCAAAAAGCATCAAG
TGTAGACGACTTATTAAAAGGCAAATCATCTAAACCATCTGAAGCCGGAGTAGGTTCAGGTGTCATCTATCAAATAAACA
ACAATTCAGCTTATATCGTTACAAACAATCATGTTATTGATGGCGCAAATGAAATTAGAGTCCAATTACATAATAAAAAA
CAAGTTAAAGCGAAATTAGTTGGTAAAGATGCAGTAACTGATATTGCTGTACTTAAAATTGAAAATACAAAAGGTATTAA
AGCGATTCAATTCGCCAACTCTTCAAAAGTACAAACTGGTGATAGCGTATTCGCAATGGGTAACCCATTAGGATTACAAT
TTGCTAACTCTGTAACATCTGGTATCATTTCAGCAAGTGAACGTACTATTGACACTGAGACAACTGGTGGCAATACAAAA
GTCAGCGTTCTTCAAACAGATGCTGCTATTAACCCAGGTAACTCAGGTGGCGCATTAGTAGATATTAATGGTAATTTAGT
TGGTATTAACTCAATGAAAATTGCTGCGACACAAGTTGAAGGTATCGGGTTTGCCATTCCAAGTAATGAAGTTAAAGTAA
CAATTGAACAACTTGTAAAACATGGTAAAATTGACCGCCCTTCGATTGGTATTGGTTTAATTAATTTGAAAGATATTCCT
GAAGAAGAACGCGAGCAACTTCATACTGATAGCGAAGACGGTATTTATGTCGCAAAAGCTGATAGTGATATTGATCTTAA
AAAAGGTGATATTATTACAGAAATTGATGGCAAGAAAATTAAAGATGATGTTGATTTAAGAAGCTATTTATATGAAAATA
AAAAACCTGGTGAATCAGTCACTGTTACCGTTATCCGTGATGGTAAAACAAAAGAAGTTAAAGTGAAATTAAAACAACAA
AAAGAACAACCAAAACGTCAAAGCCGATCAGAGCGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

38.806

94.811

0.368


Multiple sequence alignment