Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CSE16_RS20815 Genome accession   NZ_CP024123
Coordinates   4198242..4199615 (-) Length   457 a.a.
NCBI ID   WP_099425626.1    Uniprot ID   A0A2D1SYP5
Organism   Solibacillus sp. R5-41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4193242..4204615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSE16_RS20795 (CSE16_20720) ispF 4194709..4195185 (-) 477 WP_099425902.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  CSE16_RS20800 (CSE16_20725) ispD 4195454..4196137 (-) 684 WP_099425623.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  CSE16_RS20805 (CSE16_20730) - 4196151..4197239 (-) 1089 WP_099425624.1 PIN/TRAM domain-containing protein -
  CSE16_RS20810 (CSE16_20735) - 4197543..4198190 (+) 648 WP_099425625.1 acetate uptake transporter family protein -
  CSE16_RS20815 (CSE16_20740) radA 4198242..4199615 (-) 1374 WP_099425626.1 DNA repair protein RadA Machinery gene
  CSE16_RS20820 (CSE16_20745) - 4199805..4202249 (-) 2445 WP_099425627.1 ATP-dependent Clp protease ATP-binding subunit -
  CSE16_RS20825 (CSE16_20750) - 4202246..4203343 (-) 1098 WP_099425628.1 protein arginine kinase -
  CSE16_RS20830 (CSE16_20755) - 4203340..4203882 (-) 543 WP_099425629.1 UvrB/UvrC motif-containing protein -
  CSE16_RS20835 (CSE16_20760) - 4203895..4204359 (-) 465 WP_099425630.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50260.86 Da        Isoelectric Point: 7.7183

>NTDB_id=252309 CSE16_RS20815 WP_099425626.1 4198242..4199615(-) (radA) [Solibacillus sp. R5-41]
MAKKKSKFLCNSCGYEAAKWMGRCPGCGEWNTMNEEVEVISKGPRGAFQHSSTTTKAIPIINVDTPEETRIVTQMNEFNR
VLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNQGKRVLYISGEESVRQTKLRAERLGVKSPELYIYSETNLEFLNQT
IEEVQPKFVIVDSIQTVHHPEVTSAPGSVSQVRECTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFEG
ERHHNHRILRSQKNRFGSTNEIAIFEMLHGGLKEVLNPSELFLQERSQGAPGSTIVASMEGTRPILVEIQSLVTPTSFNY
PKRMATGVDQNRVQLLMAVLEKRMGMMLQAQDAYIKVAGGVKLDEPAIDLAVLTSVVSSFKDQAVRPTDCFIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRAIIPASNIGGWEFPEGIQVVGVETISDSLKSSFRDL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=252309 CSE16_RS20815 WP_099425626.1 4198242..4199615(-) (radA) [Solibacillus sp. R5-41]
ATGGCAAAGAAAAAATCAAAGTTTTTATGTAATAGCTGTGGTTATGAGGCAGCTAAATGGATGGGGCGATGTCCTGGTTG
TGGTGAATGGAATACGATGAATGAAGAAGTTGAAGTCATTTCAAAGGGCCCACGTGGGGCTTTTCAGCATTCCTCAACGA
CGACAAAAGCAATTCCTATTATTAATGTAGATACACCTGAGGAAACCCGTATTGTCACACAAATGAATGAATTTAATCGT
GTGCTAGGGGGAGGCATTGTACCAGGTTCATTAGTGTTAATTGGAGGAGATCCTGGAATTGGGAAATCTACTTTACTACT
CCAGGTTTCTGCACTGCTTTCTAATCAAGGAAAGCGCGTATTATATATTTCTGGTGAGGAATCCGTTCGCCAGACAAAGC
TACGTGCAGAGCGTCTAGGCGTCAAATCTCCAGAGCTGTACATTTATTCGGAAACCAACTTAGAATTTTTAAATCAAACA
ATAGAAGAGGTTCAGCCGAAGTTTGTAATTGTAGACTCCATTCAAACAGTGCACCATCCTGAAGTGACAAGTGCACCAGG
TAGTGTTTCGCAAGTGAGAGAATGTACGGCGGAATTGATGCGTATTGCAAAAACAAAAAATATCGCCATTTTCTTAGTAG
GGCATGTGACGAAAGAAGGTCAAATTGCAGGACCACGTATTTTGGAGCACATGGTTGATACAGTGCTTTATTTCGAAGGA
GAGCGCCATCACAATCATCGTATTTTACGAAGTCAGAAAAACCGTTTCGGATCAACAAATGAAATTGCAATTTTTGAAAT
GTTACATGGTGGACTGAAGGAAGTATTAAACCCTTCTGAGCTATTTTTACAAGAGCGTTCACAAGGGGCACCGGGTTCAA
CAATTGTGGCTTCGATGGAAGGGACACGTCCGATCCTTGTTGAAATTCAATCACTTGTGACACCAACGAGCTTTAATTAT
CCGAAGCGCATGGCAACGGGGGTAGACCAAAACCGTGTACAATTACTGATGGCTGTGTTAGAAAAACGAATGGGTATGAT
GCTACAAGCGCAAGATGCTTATATTAAAGTAGCCGGCGGAGTGAAATTAGATGAACCTGCGATAGATTTGGCGGTTTTAA
CAAGCGTTGTTTCTAGCTTTAAAGATCAGGCAGTCCGTCCAACTGATTGTTTTATAGGGGAAGTTGGCTTAACCGGTGAG
GTACGTCGTGTTTCACGTATTGAGCAACGCGTACAAGAAGCTGCTAAATTGGGTTTTAAGCGTGCGATTATTCCAGCTTC
AAATATTGGTGGTTGGGAGTTCCCAGAAGGAATTCAAGTCGTTGGTGTCGAAACGATAAGTGATTCCTTAAAATCATCGT
TTCGTGATTTATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(344-428)

AAA domain (AAA_25)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D1SYP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.524

100

0.707
  radA Streptococcus pneumoniae Rx1

62.637

99.562

0.624
  radA Streptococcus pneumoniae D39

62.637

99.562

0.624
  radA Streptococcus pneumoniae R6

62.637

99.562

0.624
  radA Streptococcus pneumoniae TIGR4

62.637

99.562

0.624
  radA Streptococcus mitis NCTC 12261

62.637

99.562

0.624
  radA Streptococcus mitis SK321

62.637

99.562

0.624

Multiple sequence alignment