Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CSE16_RS19945 Genome accession   NZ_CP024123
Coordinates   4037550..4038497 (-) Length   315 a.a.
NCBI ID   WP_099425485.1    Uniprot ID   A0A2D1SY96
Organism   Solibacillus sp. R5-41     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4032550..4043497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSE16_RS19920 (CSE16_19845) - 4033365..4033976 (-) 612 WP_099425480.1 phosphatase PAP2 family protein -
  CSE16_RS19925 (CSE16_19850) - 4034118..4034450 (-) 333 WP_099425481.1 antibiotic biosynthesis monooxygenase -
  CSE16_RS19930 (CSE16_19855) - 4034511..4035512 (-) 1002 WP_099425482.1 siderophore ABC transporter substrate-binding protein -
  CSE16_RS19935 (CSE16_19860) - 4035840..4036604 (-) 765 WP_099425483.1 ABC transporter ATP-binding protein -
  CSE16_RS19940 (CSE16_19865) - 4036601..4037557 (-) 957 WP_099425484.1 iron chelate uptake ABC transporter family permease subunit -
  CSE16_RS19945 (CSE16_19870) ceuB 4037550..4038497 (-) 948 WP_099425485.1 ABC transporter permease Machinery gene
  CSE16_RS19950 (CSE16_19875) menC 4038852..4039961 (-) 1110 WP_099425486.1 o-succinylbenzoate synthase -
  CSE16_RS19955 (CSE16_19880) - 4040208..4041041 (-) 834 WP_099425487.1 GNAT family N-acetyltransferase -
  CSE16_RS19960 (CSE16_19885) hflX 4041383..4042660 (-) 1278 WP_099425895.1 GTPase HflX -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34433.50 Da        Isoelectric Point: 9.5183

>NTDB_id=252308 CSE16_RS19945 WP_099425485.1 4037550..4038497(-) (ceuB) [Solibacillus sp. R5-41]
MRLWYLIVATVVLSFISLFLGAKDITPLDLLDFTSEETEVFLISRIPRLIAIILAGVGMSIAGLIMQSLSRNKFVSPTTA
GTDDAAKFGVLIAMIYTGGTQSEKVVLAFIFALLGTMLFMQLLNRIKFKDAIFIPLVGIMFGNIISSMTTFFAYKADILQ
NVSAFLMGSFTLVIKGNYELLYLSVPVIIITYLYANRFTVAGMGEDFAKNLGVRYNLVVNLGLILVALISTTVILTVGLI
PFVGLIIPNIVSIYKGDNLKKTLPHTAVLGALFLLACDIVGRILIYPYEIPINLTVGVIGGVIFLIMLFRGRSYA

Nucleotide


Download         Length: 948 bp        

>NTDB_id=252308 CSE16_RS19945 WP_099425485.1 4037550..4038497(-) (ceuB) [Solibacillus sp. R5-41]
ATGAGATTATGGTATTTGATTGTCGCTACTGTTGTTCTATCATTCATTTCGTTATTTCTAGGTGCCAAGGACATTACACC
ACTTGATTTGCTTGATTTTACATCAGAAGAGACAGAAGTCTTCTTAATTAGCCGTATACCGCGCTTGATTGCAATCATAT
TAGCGGGTGTCGGCATGAGTATAGCTGGTTTAATCATGCAATCTTTAAGTAGAAATAAATTTGTATCTCCAACAACTGCA
GGAACAGATGATGCGGCAAAATTTGGTGTGTTAATTGCGATGATTTATACAGGTGGGACACAATCTGAAAAAGTTGTGCT
AGCCTTTATTTTTGCATTATTAGGTACAATGCTATTCATGCAATTGTTAAACCGAATTAAGTTTAAAGATGCAATTTTTA
TCCCCCTTGTAGGGATAATGTTTGGAAATATTATTTCTTCCATGACGACGTTTTTTGCTTATAAGGCAGACATTTTACAA
AACGTTTCAGCCTTTTTAATGGGGAGCTTTACATTAGTTATTAAAGGAAACTATGAATTATTATATTTAAGCGTCCCTGT
TATTATCATAACGTATCTTTATGCAAATCGTTTTACAGTTGCAGGTATGGGAGAGGACTTTGCGAAAAACTTAGGTGTTC
GTTATAACCTTGTTGTAAATTTGGGGCTCATTTTAGTAGCACTTATTTCAACAACAGTTATTCTAACAGTCGGTTTAATT
CCGTTTGTCGGATTAATTATTCCAAACATCGTATCGATTTATAAAGGGGATAATTTAAAGAAAACATTACCGCATACAGC
AGTACTAGGTGCATTATTCCTATTGGCATGTGATATCGTTGGTCGAATTTTAATATATCCATATGAAATCCCTATTAACT
TAACAGTCGGTGTAATCGGCGGCGTGATTTTCTTAATCATGTTGTTTAGGGGGCGTTCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D1SY96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.949

100

0.511

Multiple sequence alignment