Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   CSE16_RS14955 Genome accession   NZ_CP024123
Coordinates   3021420..3023927 (-) Length   835 a.a.
NCBI ID   WP_099424646.1    Uniprot ID   A0A2D1SVY4
Organism   Solibacillus sp. R5-41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3016420..3028927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSE16_RS14945 (CSE16_14880) - 3019447..3020598 (-) 1152 WP_099424644.1 3-phenylpropionate MFS transporter -
  CSE16_RS14950 (CSE16_14885) yeiL 3020687..3021361 (+) 675 WP_371514490.1 transcriptional regulator YeiL -
  CSE16_RS14955 (CSE16_14890) recD2 3021420..3023927 (-) 2508 WP_099424646.1 ATP-dependent RecD-like DNA helicase Machinery gene
  CSE16_RS14960 (CSE16_14895) hisA 3024149..3024904 (+) 756 WP_099424647.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  CSE16_RS14965 (CSE16_14900) - 3024990..3027044 (-) 2055 WP_099424648.1 EAL domain-containing protein -
  CSE16_RS14970 (CSE16_14905) - 3027197..3028090 (-) 894 WP_099424649.1 manganese catalase family protein -
  CSE16_RS14975 (CSE16_14910) - 3028157..3028372 (-) 216 WP_099424650.1 DUF2642 domain-containing protein -

Sequence

Protein


Download         Length: 835 a.a.        Molecular weight: 93199.02 Da        Isoelectric Point: 5.0453

>NTDB_id=252298 CSE16_RS14955 WP_099424646.1 3021420..3023927(-) (recD2) [Solibacillus sp. R5-41]
MAENLDLFELNKLFILGRPIVTIFHNPTNMYSIVRVKIQETNLQYEEKEIIVVGYVPQLAEDELYRFTGVMKSHPKYGMQ
FQLETFEKEVPSTEQGIVHYLSSDLFTGIGRKTAESIVDKLGLNALTKILEDPNALDAVPRLPAEKKILIRQTIEENLGL
ERVMVRLNEWGFGPQLGMKIYQKYREETINLLMENPYRLIEDIEGVGFIRADELGSKLGMTGNHPDRIKAAIFHVLTHAA
LSEGHVYLDAEIVLPAVKNMLEQSQRIEIPYDAISKACIEMREESKICGEETRLYLPSLYFSEVGIASKIIELKSKNETS
ERFSRDEIRKAIGDVEESYNVTYAPTQVQAIETAMNSAVMILTGGPGTGKTTVVRGLVEAYAELHGLSLNPKTYIEKEEP
FPIVLAAPTGRAAKRLAESTGLPAMTIHRLLGFNGHEKDEETEREVTGRLVIIDEMSMVDTWLAHQLLKALHEDVQIIFV
GDQDQLPPVGPGQVLKDLLASKQVPVVELTDVYRQAEGSTIIEIAHQIKKGIVPDTLTTKTSDRSFIQAAAPQVTGVVTQ
VVKGALAKGQAIRDIQVLAPMYKGPAGIDALNKEIQQLVNPNDGTRKELVFGDTIYRIGDKVLQLVNQPESNVFNGDMGE
VISIIRAKETIEKQDLLIVSYDGIEVTYQRADLNQLTLAYCCSIHKSQGSEFQTVIMPVVRGYSKMLRRNLLYTGITRAK
NFLILCGEPDVLANGLAKTDDLTRFTSLKMRLNPIALEDAQKAEVQGKEEIQPKPEQAAEKKQREPSNEQLGLLNVSQSH
KIGETLLNHLTTETAPYVHPLIGMDNVSPYDFVED

Nucleotide


Download         Length: 2508 bp        

>NTDB_id=252298 CSE16_RS14955 WP_099424646.1 3021420..3023927(-) (recD2) [Solibacillus sp. R5-41]
GTGGCGGAAAATCTCGATTTATTTGAACTGAATAAGCTCTTTATTCTTGGACGTCCCATCGTCACAATTTTTCATAATCC
AACAAATATGTATTCCATTGTCCGCGTGAAAATTCAAGAAACAAATTTACAATATGAGGAAAAAGAAATAATCGTCGTTG
GGTATGTCCCGCAATTAGCAGAGGATGAACTATACCGATTTACGGGTGTCATGAAAAGTCATCCAAAATACGGCATGCAA
TTTCAACTTGAAACATTTGAAAAAGAAGTCCCATCAACGGAGCAAGGGATTGTTCATTATTTGTCAAGTGATTTATTTAC
AGGAATCGGGCGGAAAACGGCGGAATCTATTGTGGATAAGCTTGGACTCAATGCCCTAACGAAAATATTAGAGGATCCGA
ATGCGCTTGACGCTGTGCCGCGATTACCAGCTGAAAAAAAGATACTGATTCGACAAACAATTGAAGAAAATTTAGGGCTA
GAGCGTGTTATGGTACGTCTAAATGAGTGGGGATTTGGTCCACAATTAGGCATGAAAATATATCAAAAATACCGTGAAGA
AACGATAAATTTATTAATGGAAAACCCATATCGCTTAATTGAAGATATAGAAGGGGTCGGGTTTATACGTGCGGATGAGC
TAGGATCGAAACTCGGTATGACCGGCAATCACCCAGACCGAATAAAAGCGGCAATTTTCCACGTCTTAACACATGCTGCC
TTGTCAGAGGGGCATGTTTATTTAGATGCCGAAATTGTCTTGCCTGCTGTTAAAAATATGCTAGAGCAAAGCCAACGTAT
TGAAATTCCTTATGATGCGATTTCAAAAGCGTGCATTGAAATGCGAGAGGAATCGAAAATTTGCGGGGAGGAAACCCGCC
TCTATTTGCCTTCTCTGTATTTTAGTGAAGTAGGTATTGCGAGTAAAATCATCGAATTAAAAAGTAAAAATGAAACGAGT
GAGCGTTTTTCGCGCGATGAAATTCGTAAAGCGATTGGCGATGTGGAGGAAAGCTATAATGTGACCTATGCACCAACCCA
AGTTCAAGCGATTGAAACGGCGATGAACTCGGCTGTCATGATATTAACAGGTGGACCTGGTACGGGTAAAACTACAGTAG
TACGTGGACTTGTTGAGGCATATGCGGAACTTCATGGACTCTCATTGAATCCGAAAACATATATAGAAAAGGAGGAGCCA
TTTCCGATTGTTTTAGCGGCTCCAACTGGACGAGCTGCAAAACGTTTAGCTGAGTCTACTGGTTTACCAGCGATGACGAT
TCACCGATTACTCGGATTTAACGGACACGAAAAAGACGAGGAAACGGAACGTGAAGTGACAGGTCGCCTTGTCATCATTG
ATGAAATGTCGATGGTTGATACGTGGCTTGCACATCAATTATTAAAGGCATTACATGAGGATGTTCAAATCATATTCGTT
GGGGATCAGGATCAATTACCACCTGTTGGTCCCGGACAAGTATTAAAGGATTTACTTGCATCTAAGCAAGTTCCGGTTGT
TGAATTAACGGATGTTTACCGACAAGCAGAAGGTTCGACCATTATTGAAATTGCGCATCAAATTAAAAAAGGGATTGTGC
CGGATACACTGACGACGAAAACATCGGACCGTTCGTTTATTCAAGCTGCAGCTCCCCAAGTAACCGGTGTTGTCACACAA
GTTGTAAAGGGTGCGCTTGCAAAAGGGCAGGCAATTCGCGATATTCAAGTGCTTGCACCGATGTATAAAGGCCCCGCAGG
AATTGATGCACTCAATAAAGAAATTCAACAGCTCGTCAATCCGAATGATGGGACAAGGAAGGAACTCGTGTTTGGCGATA
CGATCTACCGAATTGGCGATAAAGTGCTCCAGCTCGTCAATCAACCCGAAAGCAATGTATTTAATGGCGATATGGGGGAA
GTCATTTCAATTATTCGTGCAAAGGAAACGATTGAAAAGCAGGATTTATTAATTGTTTCTTATGATGGGATTGAAGTGAC
GTACCAGCGTGCAGATTTGAATCAACTTACACTCGCGTATTGCTGCTCCATCCATAAATCACAAGGCTCAGAATTTCAGA
CAGTCATTATGCCTGTTGTTCGCGGCTATTCGAAAATGCTACGACGAAACTTGCTTTATACAGGCATTACACGTGCAAAA
AACTTTTTAATTTTATGTGGTGAGCCGGATGTTTTAGCAAACGGCTTAGCCAAAACAGATGACCTAACACGTTTTACAAG
CTTAAAAATGCGTTTAAATCCAATAGCATTGGAAGACGCGCAGAAAGCCGAAGTTCAAGGAAAAGAGGAAATCCAACCGA
AACCGGAACAAGCTGCGGAAAAAAAACAACGAGAGCCATCTAACGAGCAGCTGGGTTTATTAAATGTTTCGCAATCGCAT
AAAATTGGGGAAACATTGCTGAATCATTTAACGACTGAAACAGCGCCTTACGTTCATCCGCTAATTGGAATGGACAATGT
CTCTCCTTATGATTTTGTGGAGGATTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-726)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

AAA domain (AAA_30)

(343-549)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-651)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D1SVY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

54.765

89.222

0.489

Multiple sequence alignment