Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CSE16_RS13300 Genome accession   NZ_CP024123
Coordinates   2699236..2700927 (-) Length   563 a.a.
NCBI ID   WP_099424347.1    Uniprot ID   A0A2D1SUZ4
Organism   Solibacillus sp. R5-41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2694236..2705927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSE16_RS13275 (CSE16_13210) - 2694461..2694907 (+) 447 WP_099424343.1 NUDIX hydrolase -
  CSE16_RS13280 (CSE16_13215) - 2694960..2695511 (+) 552 WP_253896085.1 nucleotidyltransferase family protein -
  CSE16_RS13285 (CSE16_13220) - 2695720..2696097 (-) 378 WP_099424344.1 PH domain-containing protein -
  CSE16_RS13290 (CSE16_13225) spo0A 2696576..2697367 (-) 792 WP_099424345.1 sporulation transcription factor Spo0A -
  CSE16_RS13295 (CSE16_13230) - 2697746..2698675 (-) 930 WP_099424346.1 SpoIVB peptidase S55 domain-containing protein -
  CSE16_RS13300 (CSE16_13235) recN 2699236..2700927 (-) 1692 WP_099424347.1 DNA repair protein RecN Machinery gene
  CSE16_RS13305 (CSE16_13240) ahrC 2700944..2701393 (-) 450 WP_099424348.1 transcriptional regulator AhrC/ArgR -
  CSE16_RS13310 (CSE16_13245) - 2701671..2703758 (-) 2088 WP_157764824.1 cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB -
  CSE16_RS13315 (CSE16_13250) - 2703761..2705026 (-) 1266 WP_099424350.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63918.30 Da        Isoelectric Point: 4.5651

>NTDB_id=252294 CSE16_RS13300 WP_099424347.1 2699236..2700927(-) (recN) [Solibacillus sp. R5-41]
MLRELSIRNFAIIDDLTVSFFDGLTVLTGETGAGKSIIIDAVNILAGGRGSTEFIRHGEKKAELGGLFQIQNEHHPIFSK
LEEHGIDVEEGTIILRRDLNDSGKSICRVNGKLVPLTVLREIGGSLIDIHGQHENQELMDEKYHINLLDHFASTALQEVK
VRYKTAYETYRELKREVAELSMDEQRMAQRIDLYQFQIQELEQADLKADEEEALNDERRRLLNFHKIFEHANIAYEAISG
ESNGLDFIGNAMEAMDNIVVLDETFKEASEAVTTSFYALQDAAYQIKNALDDLEYDAERLNEVEQRLAQYQTMKRKYGTT
VEEILTYYAKIEEELMQLMNRDETMQKNEQLLHEMEQELTQLASQLTVIRKENALVLSDAIMDQLRMLHMEKAKFIVNFE
AHEQFDSNGKDSIAFYISTNVGEPPKSLPKVASGGELSRMMLALKTIFSTSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHQYYIKKQVEHDRTFTTISEMQETERIEEISRMMSGAEITELTLQHASELIQMANERKN
AMN

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=252294 CSE16_RS13300 WP_099424347.1 2699236..2700927(-) (recN) [Solibacillus sp. R5-41]
TTGTTAAGAGAATTAAGCATTCGCAACTTTGCAATCATAGATGATTTAACTGTTAGCTTTTTTGACGGATTAACTGTTTT
AACAGGGGAGACGGGTGCAGGGAAATCGATTATAATCGATGCGGTCAATATTTTAGCAGGTGGGCGCGGTTCGACTGAAT
TTATTCGACATGGTGAAAAAAAAGCCGAACTCGGTGGATTATTTCAAATTCAAAATGAGCATCATCCAATATTTAGTAAA
CTGGAAGAGCACGGAATCGACGTGGAAGAAGGAACGATTATTTTACGCCGTGATTTGAATGATTCGGGAAAAAGTATTTG
TCGTGTCAACGGAAAACTCGTGCCATTGACGGTATTACGTGAAATTGGTGGGAGTTTAATTGACATTCATGGGCAACATG
AAAATCAAGAGTTAATGGACGAGAAATATCATATCAACTTGCTTGATCATTTCGCGAGTACGGCATTGCAAGAGGTGAAG
GTACGCTACAAAACTGCATATGAAACGTATCGCGAGCTAAAAAGAGAAGTGGCTGAATTAAGCATGGACGAGCAAAGAAT
GGCGCAACGAATTGATTTATATCAATTCCAAATCCAAGAACTCGAACAGGCAGATCTCAAGGCGGATGAAGAAGAGGCAC
TCAATGATGAACGCCGTCGCTTATTGAATTTCCATAAAATTTTTGAACATGCGAATATTGCTTATGAGGCCATATCTGGT
GAATCAAATGGCCTTGATTTTATCGGAAACGCGATGGAGGCAATGGATAATATCGTTGTCTTAGATGAGACGTTTAAAGA
GGCATCTGAAGCGGTGACGACAAGCTTTTATGCGCTCCAGGATGCTGCCTATCAAATTAAAAATGCGTTGGATGATTTGG
AGTACGATGCAGAGCGTTTAAATGAGGTTGAGCAGCGCCTTGCACAATATCAAACAATGAAACGCAAATACGGTACGACG
GTTGAAGAAATTCTTACGTACTATGCAAAAATAGAAGAAGAATTAATGCAGCTAATGAATCGTGATGAAACGATGCAAAA
AAACGAGCAACTCCTTCACGAAATGGAACAGGAATTGACACAACTTGCAAGTCAGTTAACGGTCATTCGTAAAGAAAATG
CGCTTGTTTTAAGTGATGCAATCATGGATCAATTGCGCATGTTACATATGGAAAAAGCGAAATTTATCGTGAATTTTGAG
GCTCATGAGCAATTTGATTCAAATGGGAAGGACAGCATTGCGTTTTATATTTCGACTAATGTTGGGGAACCGCCAAAATC
ATTACCAAAAGTGGCTTCAGGCGGCGAACTTTCACGCATGATGCTGGCGCTGAAAACGATTTTCTCAACGTCTAATGGCA
TTACATCGATTATTTTTGACGAAGTGGATACCGGTGTAAGTGGTCGCGTAGCGCAAGCCATTGCTGAAAAAATTGCCGCA
ATTTCGGTGAATTCTCAGGTGCTTTGTATTTCGCATTTACCACAAGTAGCTGCGATGGCCGATCACCAATATTATATTAA
AAAACAAGTCGAGCATGACCGAACATTTACAACGATTTCTGAAATGCAAGAAACCGAGCGCATTGAAGAAATTAGCCGCA
TGATGAGTGGCGCAGAAATTACCGAATTAACATTGCAGCACGCTTCTGAGCTTATTCAGATGGCCAATGAACGCAAAAAT
GCGATGAATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D1SUZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

50.957

100

0.52

Multiple sequence alignment