Detailed information NTG0252272

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: CG474_RS20305
• Genome accession: NZ_CP024120
• Coordinates: 3847625..3848974 (-)
• Length: 449 a.a.
• NCBI ID: WP_048723495.1
• Uniprot ID: -
• Organism: Bacillus cytotoxicus strain CH_1
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3842625..3853974

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CG474_RS20285 (CG474_020190)	secA	3842835..3845345 (-)	2511	WP_048723492.1	preprotein translocase subunit SecA	-
CG474_RS20290 (CG474_020195)	hpf	3845708..3846247 (-)	540	WP_012096178.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
CG474_RS20295 (CG474_020205)	-	3846601..3846798 (-)	198	WP_012096179.1	cold shock domain-containing protein	-
CG474_RS20300 (CG474_020210)	-	3846921..3847625 (-)	705	WP_048723493.1	ComF family protein	-
CG474_RS20305 (CG474_020215)	comFA	3847625..3848974 (-)	1350	WP_048723495.1	DEAD/DEAH box helicase	Machinery gene
CG474_RS20310 (CG474_020220)	-	3849100..3850329 (-)	1230	WP_048723497.1	C40 family peptidase	-
CG474_RS20315 (CG474_020225)	-	3850600..3850914 (-)	315	WP_012096183.1	winged helix-turn-helix transcriptional regulator	-
CG474_RS20320 (CG474_020230)	-	3851199..3852041 (-)	843	WP_094398369.1	DegV family protein	-
CG474_RS20325 (CG474_020235)	-	3852432..3853070 (+)	639	WP_012096185.1	YigZ family protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 51530.44 Da
• Isoelectric Point: 9.7376

>NTDB_id=252272 CG474_RS20305 WP_048723495.1 3847625..3848974(-) (comFA) [Bacillus cytotoxicus strain CH_1]
MIQKGRQMLLHELSWSKEQLHDFISRGEIVLEKGIVRKNSNYICQRCGNQEKRLFASFLCKRCNQVCAYCRKCIMMGRVS
ECTMLVRSVCEGKQECFPHALQWKGVLSPGQNRAAKGVVEAIKQKESFFIWAVCGAGKTEMLFSGIDEALKNGKRVCIAT
PRKDVVLELAPRLQEVFPDIPFATLYGGSKEYEKEAMLIVTTTHQLLRYYRAFDVMIIDEIDAFPYVMDHMLHEAVRKAA
KEDASYIYLTATPEEKWKQSVQNGKQKGVIISGRYHRHPLPVPKLKWCGNWRKLLRRKQIPQVLLDWLLIYLQKHYPIFL
FVPHICYVEEVTAVLQRLHHKITGVHAEDPMRKEKVEAFRKGDIPLLITTTILERGVTVANLQVAVLGAEEDIFSESALV
QIAGRVGRSSHNPKGEVIYFHYGKTKAMTAAKKHIQFMNKRAKREGLID

Nucleotide

• Length: 1350 bp

>NTDB_id=252272 CG474_RS20305 WP_048723495.1 3847625..3848974(-) (comFA) [Bacillus cytotoxicus strain CH_1]
ATGATACAAAAAGGAAGACAAATGTTATTGCATGAACTTTCATGGTCAAAAGAACAGTTGCACGATTTCATAAGTAGAGG
GGAGATTGTATTAGAAAAAGGGATTGTTCGAAAAAATTCCAATTATATATGCCAACGTTGCGGGAATCAAGAGAAACGTC
TATTTGCATCATTTTTATGCAAAAGGTGTAATCAAGTATGTGCGTATTGCCGGAAGTGTATTATGATGGGACGAGTAAGC
GAATGTACGATGCTTGTTCGAAGTGTTTGCGAAGGGAAACAAGAATGTTTTCCTCATGCCTTGCAGTGGAAAGGAGTATT
GTCACCGGGGCAAAATAGAGCTGCAAAGGGGGTAGTAGAAGCGATTAAACAGAAAGAGTCCTTTTTTATTTGGGCGGTAT
GTGGTGCTGGAAAAACGGAGATGTTGTTTTCTGGCATAGATGAAGCGCTTAAAAACGGTAAGCGAGTTTGTATAGCGACG
CCTCGAAAAGATGTTGTATTAGAATTAGCTCCACGACTACAAGAAGTGTTTCCAGATATACCATTTGCGACATTATACGG
AGGCAGTAAAGAATATGAAAAAGAAGCGATGCTTATCGTAACTACAACTCATCAGTTGCTTCGCTATTATAGGGCGTTTG
ATGTCATGATTATAGATGAAATTGATGCTTTTCCGTATGTGATGGATCATATGTTACATGAGGCCGTAAGAAAAGCGGCG
AAGGAGGATGCTTCCTATATTTATTTAACAGCAACTCCAGAAGAGAAATGGAAACAGAGTGTGCAAAATGGTAAACAAAA
AGGTGTTATTATATCAGGACGTTATCATCGCCATCCATTACCGGTTCCTAAATTAAAATGGTGTGGAAATTGGAGAAAAC
TACTTCGACGTAAACAAATTCCTCAAGTTCTATTGGACTGGCTTCTTATATATCTACAAAAACATTATCCTATCTTTTTA
TTTGTTCCTCATATTTGTTATGTAGAGGAAGTAACGGCTGTGTTACAAAGATTACATCATAAAATTACTGGTGTTCATGC
AGAAGATCCAATGAGAAAAGAGAAAGTAGAGGCATTTCGTAAAGGGGATATACCATTACTCATAACTACAACTATATTGG
AGAGAGGGGTAACGGTCGCGAATTTACAAGTAGCTGTGCTAGGAGCAGAAGAGGATATTTTTTCTGAAAGTGCACTGGTT
CAGATAGCGGGCCGCGTTGGTAGAAGTTCTCACAATCCAAAGGGGGAAGTCATTTATTTTCATTATGGAAAAACGAAAGC
AATGACTGCTGCGAAAAAGCATATTCAATTTATGAATAAAAGGGCTAAACGAGAAGGGTTGATAGATTGA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (312-409)

• Type III restriction enzyme, res subunit (ResIII) (107-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	50.113	98.218	0.492
comFA	Latilactobacillus sakei subsp. sakei 23K	38.626	93.987	0.363